PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG025885.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ERF

Protein Properties

Length: 191aa MW: 21481.3 Da PI: 8.3763

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG025885.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.2	2.1e-18	5	55	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr++ +g+Wv+eIr+p +r++lg+f tae Aa+a+++a+ ++g CCG025885.1 5 KKFRGVRQRQ-WGSWVSEIRHP-----LlkRRVWLGTFETAEAAARAYDQAAILMNG 55 59***999.******8.....334********************98876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.49E-23	5	65	No hit	No description
PROSITE profile	PS51032	22.036	6	63	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.7E-32	6	65	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	3.92E-20	6	65	IPR016177	DNA-binding domain
SMART	SM00380	6.8E-39	6	69	IPR001471	AP2/ERF domain
Pfam	PF00847	2.1E-11	6	55	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	7	18	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.9E-10	29	45	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MVQCKKFRGV RQRQWGSWVS EIRHPLLKRR VWLGTFETAE AAARAYDQAA ILMNGQNAKT 60 NFPASHLDQD TKLGKDNNSP LPAKALAELL YSKLRKCCGK DPSPSLTCLR LDNDNSHIGV 120 WQKKAGSCSS SNWVMRVELG NSNRKSTQVM EELRPSLSSE SSSRVEIEPE NGTDEEDKIA 180 MQMIEELLNC N

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	9e-17	5	63	1	60	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A	2e-16	6	66	14	75	Ethylene-responsive transcription factor ERF096
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Functional Description ? help Back to Top
Source	Description
UniProt	Promotes cuticle formation by inducing the expression of enzymes involved in wax biosynthesis. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:15319479}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By wounding in cauline leaves, stems, and siliques, but not in rosette leaves. {ECO:0000269\|PubMed:15319479}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147140	1e-172	EF147140.1 Populus trichocarpa clone WS01228_C18 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011039697.1	1e-141	PREDICTED: ethylene-responsive transcription factor SHINE 2-like
Swissprot	Q3E958	2e-70	SHN3_ARATH; Ethylene-responsive transcription factor SHINE 3
TrEMBL	B9HA50	1e-121	B9HA50_POPTR; Uncharacterized protein
STRING	POPTR_0006s26990.1	1e-122	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF576	33	144

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G11190.1	3e-66	ERF family protein

Publications ? help Back to Top
Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Sadler C, et al. Wax and cutin mutants of Arabidopsis: Quantitative characterization of the cuticular transport barrier in relation to chemical composition. Biochim. Biophys. Acta, 2016. 1861(9 Pt B): p. 1336-1344 [PMID:26965486]