PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG025920.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 215aa    MW: 24079.2 Da    PI: 6.9342
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG025920.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.0001483105123
                  EEETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                  y+C  C++ Fs+   L  H++ H
  CCG025920.1  83 YTCAFCKRGFSNAQALGGHMNIH 105
                  9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.0E-481107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.13E-681109No hitNo description
PROSITE profilePS5015711.17783110IPR007087Zinc finger, C2H2
PROSITE patternPS00028085105IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MNPPVLLAVQ FFEAMEAKSK EKSSNLHIIR YAQINSQRCR KVAICQFFQH VIMDISLTSS  60
TGKSDHIGCD SDYLQDSSHV RSYTCAFCKR GFSNAQALGG HMNIHRRDRA KLKQAFDENF  120
LSLDITKFTE EISRAPKTPC TLPVDQHVSF TLGNKASEEV QPLPFIVDVK AGTDGDEDNK  180
MQLNQATLQA GLDLELRLGS DPHESSPRSS TREFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1105113RRDRAKLKQ
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2090990.0AC209099.1 Populus trichocarpa clone POP015-B18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006394.11e-119PREDICTED: transcriptional regulator TAC1-like
TrEMBLA0A2K1R7C81e-107A0A2K1R7C8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s09020.11e-108(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33353162
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.13e-25C2H2 family protein