PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026019.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 365aa    MW: 39773.3 Da    PI: 5.1764
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026019.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA49.94.5e-16218254135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  CCG026019.1 218 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGS 254
                  *******99************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132013.04378113IPR010399Tify domain
SMARTSM009799.9E-878113IPR010399Tify domain
PfamPF062004.1E-1081112IPR010399Tify domain
PROSITE profilePS5101712.65146188IPR010402CCT domain
PfamPF062031.0E-14146187IPR010402CCT domain
SMARTSM004012.7E-9212270IPR000679Zinc finger, GATA-type
SuperFamilySSF577167.6E-11213260No hitNo description
Gene3DG3DSA:3.30.50.101.1E-14216259IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.74E-15217261No hitNo description
PfamPF003206.7E-14218254IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218245IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 365 aa     Download sequence    Send to blast
MAAAAATTTT TTPQSLQSRP YDDHRTRASI QIDDEDGEYE DADGMYGMKE VATVAQVNSG  60
VSVAEHHREV RDGGGVVTTS RTSELTLSFE GEVYVFPAVT PEKVQAVLLL LGGRDMPTAV  120
PTIGVQYDQN NRGAVDNPKC SNLSRRIASL VRFREKRKER CFDKKIRYTV RKEVAQRMHR  180
KNGQFASLKE SPGGSSWDSS QSCLQDVIPR PETVVRRCQH CGVSENNTPA MRRGPAGPRT  240
LCNACGLMWA NKGSLRDLSK GVRNLPMGQI EPGTPIDVKP SIMEGEFSGN QDEHGTAKNL  300
PKAVSEGFNN CSINPDEVLQ EANQDLTNTL PMGAVHSSGD DDGQEPLVEL ANPSDSELDL  360
PANFE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006214.10.0PREDICTED: GATA transcription factor 24-like isoform X5
SwissprotQ8GXL71e-67GAT24_ARATH; GATA transcription factor 24
TrEMBLB9H6T40.0B9H6T4_POPTR; Uncharacterized protein
STRINGPOPTR_0005s19550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.23e-65ZIM-like 1
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]