PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026078.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 925aa    MW: 102693 Da    PI: 7.4508
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026078.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box26.21.6e-08435480342
     zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                   r+C+ +e+ ++ l C+ +   lC  C   +H+       H++vp+
  CCG026078.1 435 VRVCEACERSPAALLCKADAASLCTACDADIHSAnplarrHQRVPI 480
                  689*****************************66899999**9997 PP
2CCT66.95.6e-23678721144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea++lRY+eK+k RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  CCG026078.1 678 REARVLRYREKKKARKFEKTIRYASRKAYAETRPRIKGRFAKRT 721
                  9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF127965.8E-873134IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484032.35E-3273277IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.8E-3577280IPR020683Ankyrin repeat-containing domain
SMARTSM002480.1479108IPR002110Ankyrin repeat
CDDcd002041.12E-2279217No hitNo description
PROSITE profilePS500888.68379111IPR002110Ankyrin repeat
PROSITE profilePS5029727.71779275IPR020683Ankyrin repeat-containing domain
SMARTSM002480.78113142IPR002110Ankyrin repeat
PfamPF127967.4E-10142219IPR020683Ankyrin repeat-containing domain
CDDcd002041.63E-20155281No hitNo description
SMARTSM002480.015158190IPR002110Ankyrin repeat
PROSITE profilePS500888.71158193IPR002110Ankyrin repeat
SMARTSM002480.065196225IPR002110Ankyrin repeat
SMARTSM00248160230258IPR002110Ankyrin repeat
PROSITE profilePS5011910.736390437IPR000315B-box-type zinc finger
SMARTSM003367.6E-8390437IPR000315B-box-type zinc finger
CDDcd000212.16E-7393437No hitNo description
PROSITE profilePS5011911.704433480IPR000315B-box-type zinc finger
PfamPF006438.1E-7435480IPR000315B-box-type zinc finger
CDDcd000214.56E-9436480No hitNo description
SMARTSM003363.9E-10438480IPR000315B-box-type zinc finger
PfamPF062037.7E-17678720IPR010402CCT domain
PROSITE profilePS5101716.569678720IPR010402CCT domain
PfamPF139621.9E-27756873IPR026961PGG domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 925 aa     Download sequence    Send to blast
MCTKWTTPTI NYWQPLLLNE VELVTTNVDN ETYVREQNER GSRAKEVRNI GECVMPRATS  60
STCHCNTVKK EKMDYGGPNG RTALHAASKM EDHETARKLL EKEKKLTKTT DENGWSPLHI  120
ATIRGPVDAM KEIVSRCPAC SRKLLEKEKT LTKTTDENGW APLHYAAYFS TRLNISVVKV  180
LLEHDASAAY IAETEKKRTA LHIAAIQGHV DVMKEIVSGC PACCELVDNR GWNALHYAVA  240
TKDREVFKEC MEIPELARLK TKKDDKGNTP FHLIAALAHE KKQWRRVLYK YYYNKREVCG  300
KSPRKREVCG KSPHKREVCG LNKRKLSVND IYEGKFGEIQ VSLILAPNAH SLSYTAKDSI  360
IEIGIGRKRE EVMLKEESGG SGSGGVVVNN WARVCDTCRA AACTVYCRAD SAYLCAGCDA  420
RVHAANRVAS RHERVRVCEA CERSPAALLC KADAASLCTA CDADIHSANP LARRHQRVPI  480
LPISGCPYGT QVGPAAGETE DQFMTQEGEE TIGEEDEDEA ASWLLLNPAK NSNNQNNNGF  540
VFSGEVDEYL DIVEYNSCAE NQYSDQYNQQ HYSVPPKSCG GDSVVPIQYG EGKDHQQQQQ  600
QQYHNFQLGL EYEPAKAAYS YDGSISQGVS MSSMDVGVVP ESAMSEISIS HQSAPRGTID  660
LFSSPPIQMP SQLSPMEREA RVLRYREKKK ARKFEKTIRY ASRKAYAETR PRIKGRFAKR  720
TDVDVEKEIL ESLEDVGSGP LGSRKVLKGQ NEGEKEALSR ARESHLVVGA LIATVTFAAA  780
FTLPGGYKSD QGTAILAKKA AFIVFIISDA MSMVLSILAV FVHFLISLIH GFEMVKDKVI  840
DEDTTEILFV VATLFTMIGM GTMIIAFVTG TYTVLEPSSE LAISTCLIGL SFFVLGNLVF  900
AFIYKDSLGK QAILNFLSDK LRFIF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5151500.0AY515150.1 Populus deltoides CONSTANS-like protein CO1 mRNA, complete cds.
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-108CONSTANS-like 2