PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026148.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 186aa    MW: 21117.7 Da    PI: 6.1215
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026148.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.13.7e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l ++++ +G g W++ a+  g++Rt+k+c++rw++yl
      CCG026148.1 15 KGPWTLEEDLILTNYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 62
                     79********************************************97 PP
2Myb_DNA-binding35.22.8e-1168107146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      rg+ T+eE++l+ ++++    + W++Ia++++ gRt++++k++w++
      CCG026148.1  68 RGNITPEEQLLIMELHA----K-WSKIAKHLP-GRTDNEIKNYWRT 107
                      78889999999999987....5.99*******.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.2741066IPR017930Myb domain
SuperFamilySSF466895.31E-2612105IPR009057Homeodomain-like
SMARTSM007173.4E-131464IPR001005SANT/Myb domain
PfamPF002491.0E-151562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.0E-221669IPR009057Homeodomain-like
CDDcd001672.07E-101762No hitNo description
SMARTSM007173.9E-867111IPR001005SANT/Myb domain
PROSITE profilePS5129413.84267113IPR017930Myb domain
PfamPF002497.7E-1068107IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.9E-2070112IPR009057Homeodomain-like
CDDcd001675.17E-1072107No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0080086Biological Processstamen filament development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MDKSPCNSQD VEVRKGPWTL EEDLILTNYI ANHGEGVWNS LAKAAGLKRT GKSCRLRWLN  60
YLRPDLRRGN ITPEEQLLIM ELHAKWSKIA KHLPGRTDNE IKNYWRTRIK KHTKQTEPFA  120
AGSSETNEDG SSTCQVSSAT DQMEAYCPPL YQGDVGAFSG GNIPQELNEN YWSMDDLWSM  180
QLLNGD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-21151117106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4970530.0FJ497053.1 Populus x canadensis MYBF1 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011005145.11e-136PREDICTED: myb-related protein 305 isoform X2
SwissprotP813917e-86MYB05_ANTMA; Myb-related protein 305
TrEMBLE4W6781e-128E4W678_POPCA; MYBF1
STRINGevm.model.supercontig_186.71e-98(Carica papaya)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.12e-78myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]