PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026246.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 209aa    MW: 23016.5 Da    PI: 4.9648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026246.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.51.6e-181667156
          AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 s+ykGVr +k +grWv+eIr p++   r r++lg++++ae+Aa a +aa  +l+g+
  CCG026246.1 16 SKYKGVRKRK-WGRWVSEIRLPNS---RERIWLGSYDSAEKAAHAFDAALFCLRGN 67
                 89*****999.**********933...5*************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.37E-191675IPR016177DNA-binding domain
CDDcd000181.35E-251676No hitNo description
PfamPF008471.8E-111666IPR001471AP2/ERF domain
SMARTSM003801.5E-281780IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-271775IPR001471AP2/ERF domain
PROSITE profilePS5103220.9951774IPR001471AP2/ERF domain
PRINTSPR003671.1E-81829IPR001471AP2/ERF domain
PRINTSPR003671.1E-84056IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MVKFNTEKPV AERSDSKYKG VRKRKWGRWV SEIRLPNSRE RIWLGSYDSA EKAAHAFDAA  60
LFCLRGNTMK FNFSENPPNI AGGGSLSPSE IQEAAARFAN SEPQRGQSGK LEADQSTSVS  120
ESRPESPCLS AASDGTVRSD GGELIRDMPF FDMVMSTGSS NHPKEYGIFP GFDDLHSGFF  180
APSLLPNLDH GEGVNLDGVL EEDSFLWNF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1217731471Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11824KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559530.0EF155953.1 Populus trichocarpa RAP2-like protein (RAP2L12) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039943.11e-154PREDICTED: ethylene-responsive transcription factor ERF017-like
SwissprotQ84QC22e-55ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLA9PLA21e-140A9PLA2_POPTR; RAP2-like protein
STRINGPOPTR_0006s14090.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-58ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]