PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026249.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 154aa    MW: 17090.1 Da    PI: 8.7088
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026249.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.26.5e-211464256
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                 +y+GVr +k +g+WvAeIr p++   r r++lg++ taeeAa+a++aa ++l+g+
  CCG026249.1 14 RYRGVRMRK-WGKWVAEIRQPNS---RNRIWLGSYNTAEEAARAYDAAVLCLRGP 64
                 69*****99.**********943...49************************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.84E-281371No hitNo description
SMARTSM003801.2E-361477IPR001471AP2/ERF domain
PfamPF008471.3E-141463IPR001471AP2/ERF domain
SuperFamilySSF541713.6E-231472IPR016177DNA-binding domain
PROSITE profilePS5103223.4591471IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.7E-321472IPR001471AP2/ERF domain
PRINTSPR003671.4E-101526IPR001471AP2/ERF domain
PRINTSPR003671.4E-103753IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MARERRERRD HNQRYRGVRM RKWGKWVAEI RQPNSRNRIW LGSYNTAEEA ARAYDAAVLC  60
LRGPSATFNF PSNVPEIPAT TEILPPAQIR EVALRHARRG STLEAAERIV ESGLFEGPSG  120
ITGEVYLGGE GDGAESLEGV SSGVCYQTSG VWTV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1614711472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559550.0EF155955.1 Populus trichocarpa RAP2-like protein (RAP2L14) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011039946.11e-109PREDICTED: ethylene-responsive transcription factor ERF016-like
SwissprotQ9C5919e-33ERF16_ARATH; Ethylene-responsive transcription factor ERF016
TrEMBLA0A3N7F6D82e-94A0A3N7F6D8_POPTR; Uncharacterized protein
STRINGPOPTR_0006s14110.12e-91(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15296813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G21960.12e-27ERF family protein