PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026272.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 218aa    MW: 24226.7 Da    PI: 7.7609
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026272.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.3e-081360146
                     TSSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                     r +WT eE +l+ +a++++ +g    +++I+++++  +tl+q  ++++ 
      CCG026272.1 13 RVKWTFEENKLFENAIAEFDPGspdFFEKISERIP-EKTLNQTEDHFLV 60
                     789*****************99*************.9*****9999876 PP
2Myb_DNA-binding27.57.3e-09901261147
                      HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      l++++ k++G+g+W++I+r    +Rt+ q+ s+ qky
      CCG026272.1  90 LFLNGLKKYGKGDWRSISRNCVVTRTPSQVASHAQKY 126
                      699*****************999*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.606.4E-4661IPR009057Homeodomain-like
SuperFamilySSF466897.9E-8870IPR009057Homeodomain-like
SMARTSM007178.2E-71264IPR001005SANT/Myb domain
PfamPF002495.8E-61360IPR001005SANT/Myb domain
CDDcd001671.88E-61562No hitNo description
PROSITE profilePS512949.0283131IPR017930Myb domain
SMARTSM007173.687129IPR001005SANT/Myb domain
PfamPF002492.3E-690126IPR001005SANT/Myb domain
CDDcd001677.43E-790127No hitNo description
TIGRFAMsTIGR015571.3E-1190129IPR006447Myb domain, plants
SuperFamilySSF466891.28E-990132IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-691125IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MNSSSSSSPN KERVKWTFEE NKLFENAIAE FDPGSPDFFE KISERIPEKT LNQTEDHFLV  60
LIEDVEKIES GLIPLPDYGT TSRGDKGKGL FLNGLKKYGK GDWRSISRNC VVTRTPSQVA  120
SHAQKYFLRL QNSSNTEHKQ GYSSTTRHRR RNSSSSSTTD KAAASMDAAP SPHLSVPASI  180
SNEFAATPFS HFSSDLNVPA SITDQSFAAF PPYLDRQN
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2091000.0AC209100.1 Populus trichocarpa clone POP042-C19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009362.11e-140PREDICTED: transcription factor DIVARICATA-like
SwissprotQ8S9H71e-33DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A2K1ZQ834e-87A0A2K1ZQ83_POPTR; Uncharacterized protein (Fragment)
STRINGPOPTR_0007s08530.11e-104(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1862266
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-25MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]