PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026290.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 150aa MW: 17136.6 Da PI: 7.9168

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026290.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	98.3	1.1e-30	5	123	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkat.gk.dkevlsk. 95 lppGfrF P+deelvv++L++k++ +++ +vi+++d++ ++Pw+L+ k+ +e k++yf+s+r +nr+t++g Wk g+ ++++l++ CCG026290.1 5 LPPGFRFCPSDEELVVHFLHRKAALLPCHP-DVIPDLDLHPYDPWELDGKALSEGKQCYFYSRRT--------QNRITSNGCWKPMvGHvEEPILASe 93 79***********************999.99**********977778899**984........589****65144577888776 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++lvg+kk ++fy a +g kt+W+m+ey l CCG026290.1 94 NNKLVGIKKYFIFY---AAEGIKTNWIMEEYLL 123 8888******...899*********76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-37	3	130	IPR003441	NAC domain
PROSITE profile	PS51005	31.93	5	146	IPR003441	NAC domain
Pfam	PF02365	9.6E-20	6	122	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 150 aa Download sequence Send to blast
MAANLPPGFR FCPSDEELVV HFLHRKAALL PCHPDVIPDL DLHPYDPWEL DGKALSEGKQ 60 CYFYSRRTQN RITSNGCWKP MVGHVEEPIL ASENNKLVGI KKYFIFYAAE GIKTNWIMEE 120 YLLSEHCTSH GSSPSTKSSK TRARSKQVRE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-28	4	133	19	155	NAC domain-containing protein 19
3swm_B	1e-28	4	133	19	155	NAC domain-containing protein 19
3swm_C	1e-28	4	133	19	155	NAC domain-containing protein 19
3swm_D	1e-28	4	133	19	155	NAC domain-containing protein 19
3swp_A	1e-28	4	133	19	155	NAC domain-containing protein 19
3swp_B	1e-28	4	133	19	155	NAC domain-containing protein 19
3swp_C	1e-28	4	133	19	155	NAC domain-containing protein 19
3swp_D	1e-28	4	133	19	155	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB970796	0.0	AB970796.1 Populus tremula x Populus tremuloides PtxtNAC161 mRNA for NAC transcriptional factor, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004987.1	1e-108	PREDICTED: NAC transcription factor ONAC010
Swissprot	Q8GWK6	7e-55	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A0E4FJJ7	1e-101	A0A0E4FJJ7_POPPZ; NAC transcriptional factor
STRING	POPTR_0003s01720.1	7e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1736	33	95

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	9e-57	xylem NAC domain 1

Publications ? help Back to Top
Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]