PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026321.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 286aa    MW: 31260.2 Da    PI: 5.1651
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026321.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.38.1e-1865115155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  + ++GVr +  +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  CCG026321.1  65 PVFRGVRMRT-WGKWVSEIREPRK---KNRIWLGTFSTPEMAARAHDVAALSIKG 115
                  579****998.**********854...59**********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.4E-1265115IPR001471AP2/ERF domain
SMARTSM003802.1E-3566129IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-2166124IPR016177DNA-binding domain
PROSITE profilePS5103222.62966123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.8E-3166124IPR001471AP2/ERF domain
PRINTSPR003671.6E-96778IPR001471AP2/ERF domain
CDDcd000186.58E-3167125No hitNo description
PRINTSPR003671.6E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MTDPPTPNSE KDSSNIYSYS SSPTPSSTSS SGLSPNPVSK PDPEKNLRKP KRPRETNSSN  60
NSKHPVFRGV RMRTWGKWVS EIREPRKKNR IWLGTFSTPE MAARAHDVAA LSIKGNSAIL  120
NFPELAGSLP RPASNSPRDV QAAAAKAAYM DFITVTTVTT NVCNEENNSN NNSTASNNNG  180
SSSSQMTQSS SSSSSSSPSS STVRVTSDVA TPDELSEIVE LPSLETSHEE SPEFVLFGDS  240
WPYINQSWCY EDYGVKSIGY FSDQYLSIIP ENNVISSGFE TLLWEH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-1961123972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559220.0EF155922.1 Populus trichocarpa TINY-like protein (TINYL3) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009351.10.0PREDICTED: ethylene-responsive transcription factor ERF043-like
SwissprotQ9M0805e-55ERF43_ARATH; Ethylene-responsive transcription factor ERF043
TrEMBLU5GBE61e-135U5GBE6_POPTR; Uncharacterized protein
STRINGPOPTR_0006s17670.11e-136(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.14e-50ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]