PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026343.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 133aa    MW: 15467 Da    PI: 7.7725
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026343.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.91.1e-10897188
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE.....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliy...rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f k+l+p ++ +++ l++p + +e++   +g     +     d + + W++ l+             ++l++ W +Fv+++gL   D vvF +++++
  CCG026343.1  8 FTKKLKP-SHISHA-LSIPTHVLEAFpipEGA--HMMNFEAVDVTDNAWRFCLSTrmtGA---YpkpVLLRSSWHRFVEQKGLAPEDRVVFFMERDE 97
                 7788844.444555.********999554333..334455567889*******7633333...3556********************9999876654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.5E-14698IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.24E-127102IPR015300DNA-binding pseudobarrel domain
CDDcd100171.80E-10797No hitNo description
PfamPF023622.9E-8897IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MEPVQVLFTK KLKPSHISHA LSIPTHVLEA FPIPEGAHMM NFEAVDVTDN AWRFCLSTRM  60
TGAYPKPVLL RSSWHRFVEQ KGLAPEDRVV FFMERDEAND MIRRYTVRAQ RKVMTLMAQD  120
VWVDVEHLPL YGL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165930.0AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007873.11e-82PREDICTED: uncharacterized protein LOC105113408
TrEMBLA0A3N7H3I58e-89A0A3N7H3I5_POPTR; Uncharacterized protein
STRINGcassava4.1_027512m2e-48(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1390729
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.19e-08ethylene response DNA binding factor 3