PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026357.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 414aa MW: 43842.4 Da PI: 8.271

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026357.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	128.7	5.7e-40	87	214	3	89
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg........... 88 + k++++++hTkv+gR+RR+R++a caar+F+L++eLG+++d++tieWLlqqa+pai++ tgt++++a+++ ++s +ss+++ s++ CCG026357.1 87 TTKRPSKDRHTKVDGRGRRIRMPAMCAARVFQLTRELGHKSDGETIEWLLQQAEPAIIATTGTGTIPANFStLNVSLRSSGATISAPasksaplsfhg 184 6899****************************************************************999877777777774444444455566666 PP TCP 89 .............................k 89 CCG026357.1 185 glafydannasetrravasnppmlgfhhqL 214 666655444444444444444444444440 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	2.4E-38	92	261	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	28.085	92	146	IPR017887	Transcription factor TCP subgroup

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048510	Biological Process	regulation of timing of transition from vegetative to reproductive phase
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 414 aa Download sequence Send to blast
MESQRNTANQ QSNSSGSKDQ YHGQKQESVA ASLQLVPLES RPSQLQQQHG STTTTPTSQG 60 PSMGSISSQI GTHPSTSTSN SAVTKSTTKR PSKDRHTKVD GRGRRIRMPA MCAARVFQLT 120 RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN VSLRSSGATI SAPASKSAPL 180 SFHGGLAFYD ANNASETRRA VASNPPMLGF HHQLYPQNLV SDDNYMRKTF REDLFKETTQ 240 QQSTETIEAS NSAKSRAGVQ DQETAGSIRP ATNMLPTPMW AVAPAATTNG GNTFWMLPVG 300 GGATPTASVQ EPQMWTFPAA AAGVPSMQRV NFGGGGGGRV SSPVQLGSMI VQQQVGANQQ 360 LGLGISESNM GMILGGVSPY SSCRVGLGMN LEHHNQDNQP QGSESGDENP NDSQ

Sequence ? help Back to Top

Protein Sequence Length: 414 aa Download sequence Send to blast

MESQRNTANQ QSNSSGSKDQ YHGQKQESVA ASLQLVPLES RPSQLQQQHG STTTTPTSQG  60
PSMGSISSQI GTHPSTSTSN SAVTKSTTKR PSKDRHTKVD GRGRRIRMPA MCAARVFQLT  120
RELGHKSDGE TIEWLLQQAE PAIIATTGTG TIPANFSTLN VSLRSSGATI SAPASKSAPL  180
SFHGGLAFYD ANNASETRRA VASNPPMLGF HHQLYPQNLV SDDNYMRKTF REDLFKETTQ  240
QQSTETIEAS NSAKSRAGVQ DQETAGSIRP ATNMLPTPMW AVAPAATTNG GNTFWMLPVG  300
GGATPTASVQ EPQMWTFPAA AAGVPSMQRV NFGGGGGGRV SSPVQLGSMI VQQQVGANQQ  360
LGLGISESNM GMILGGVSPY SSCRVGLGMN LEHHNQDNQP QGSESGDENP NDSQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00614	PBM	Transfer from AT1G35560	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC215626	0.0	AC215626.1 Populus trichocarpa clone POP014-A12, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009347.1	0.0	PREDICTED: transcription factor TCP23-like
Swissprot	Q9LQF0	2e-80	TCP23_ARATH; Transcription factor TCP23
TrEMBL	A0A2I4KK62	0.0	A0A2I4KK62_POPTR; TCP family protein
STRING	POPTR_0013s11510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6077	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G35560.1	1e-69	TCP family protein