PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026376.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 184aa    MW: 19856.1 Da    PI: 5.7355
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026376.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP244.83.2e-142776255
          AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 ++kG r++k +g+Wv+eIr p   gk+ r +lg++ t+e Aa a++ a  +l+g
  CCG026376.1 27 KFKGARRRK-WGKWVSEIRIP---GKQERLWLGSYSTPEAAAVAHDIASYCLRG 76
                 799999888.**********8...556*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.4E-232686IPR001471AP2/ERF domain
SMARTSM003801.4E-262792IPR001471AP2/ERF domain
PROSITE profilePS5103221.3642786IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-162787IPR016177DNA-binding domain
CDDcd000181.71E-232786No hitNo description
PfamPF008471.1E-72776IPR001471AP2/ERF domain
PRINTSPR003672.7E-72839IPR001471AP2/ERF domain
PRINTSPR003672.7E-75066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 184 aa     Download sequence    Send to blast
MSGSSGSSGS SSRIIDQESG ASAAQRKFKG ARRRKWGKWV SEIRIPGKQE RLWLGSYSTP  60
EAAAVAHDIA SYCLRGPSSL ESLNFPLMLP ASVREDMSPK SIQKAASDAG MAIDAQMILN  120
RSLQNEVKDG PEKVAINHGP ETQLWEPAAG GGGDSNNLCE NWHENNIGTR VGDDLNISIE  180
DYLL
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00158DAPTransfer from AT1G22810Download
Motif logo
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559510.0EF155951.1 Populus trichocarpa RAP2-like protein (RAP2L10) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036246.11e-133PREDICTED: ethylene-responsive transcription factor ERF020
TrEMBLA0A2K1WR071e-119A0A2K1WR07_POPTR; Uncharacterized protein
TrEMBLA9PLA01e-119A9PLA0_POPTR; RAP2-like protein
STRINGPOPTR_0019s10220.11e-119(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54893054
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22810.12e-45ERF family protein