PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026417.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 871aa    MW: 97511.9 Da    PI: 4.8263
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026417.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding40.75.4e-13851246
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ 
      CCG026417.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWHR 51
                     78*****************************.***********85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129421.444257IPR017930Myb domain
SuperFamilySSF466894.04E-12456IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-14554IPR009057Homeodomain-like
SMARTSM007171.6E-12655IPR001005SANT/Myb domain
PfamPF002496.0E-11850IPR001005SANT/Myb domain
CDDcd001675.94E-111051No hitNo description
PfamPF118315.7E-59258507IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 871 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWH RKRKRKGIDY  60
NSEIPFEKRP PPGFYDVADE DRPAEQPKFP TTIEELEGKK RMDIEAQLRK QDMAKNRIAE  120
RQDAPSAILQ ANKLNDPETV RKRSKLMLPA PQISDHELED IAKMGYASDL LAGSEELTDG  180
SGATRALLAN YAQTPRQGMT PLRTPQRTPA GKGDAIMMEA ENLARLRESQ TPLLGGENPE  240
LHPSDFSGVT PKKREIQTPN PMLTPSATPG GVALTPRIGM TPSRDSFGMT PKGTPIRDEL  300
HINEDIDMHD SAKLEQRRQA DLRRNLISGL GNLPQPKNEY QIVIQPPPEE NEEPEEKIEE  360
DMSDRIARAK AEEEARQQAL LRKRSKVLQR ELPRPPAASL ELIRDSLLRA DGDKSSFVPP  420
TSIEQADEMI RKELLALLEH DNAKYPLEEK PSKEKKKGSK HPSNRSAASI PVIEDFEEDE  480
LKQADNLIKV EAQYIRVAMG HEDESLDEFV EAHKTCINDL MYFPTRNAYG LSSVAGNMEK  540
LTALQNEFEN VKTRLEAERE KALRLEKKVN VLTQGYQMRA ERQLLPPIEL TLKQMDTSGT  600
ELECFQALQR QEQLAASHRI NGLWEEVQKQ KELEQTMQRR YGDLVAELER IQQLIINYRA  660
LAIQQEEIAA KNRALELAEA ATKQAAILNS EPFEPVTPDE HGNSMPVGSS DKKVLEQQMD  720
VDSEKVHSPL AMDKSLTNNV PSDEGQMRLV QGNGHEASGA NPSSLDGNNQ NGVPVLTENS  780
INRGDIISTV DVEVEIKVND ASVDGDAGDV IMSTEIMDGL ASVEGESILE RADDFDKADM  840
MEVSSDGDDK VNQKKDEGKL PVIDVDLTNS E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L2e-9426523799Cell division cycle 5-like protein
5xjc_L2e-9426523799Cell division cycle 5-like protein
5yzg_L2e-9426523799Cell division cycle 5-like protein
5z56_L2e-9426523799Cell division cycle 5-like protein
5z57_L2e-9426523799Cell division cycle 5-like protein
5z58_L2e-9426523799Cell division cycle 5-like protein
6ff4_L2e-9426523799Cell division cycle 5-like protein
6ff7_L2e-9426523799Cell division cycle 5-like protein
6icz_L2e-9426523799Cell division cycle 5-like protein
6id0_L2e-9426523799Cell division cycle 5-like protein
6id1_L2e-9426523799Cell division cycle 5-like protein
6qdv_O2e-9426523799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15055RKRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036374.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9IPH80.0B9IPH8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s03520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]