PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026445.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 132aa MW: 14742.5 Da PI: 9.2559

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026445.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	92.3	4.3e-29	19	72	4	58
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 ++Y+eC +NhA+ +GghavDGCgEf+p+ g++gt++a+ C ACgCHRnFHR++v CCG026445.1 19 AEYRECWRNHAVLTGGHAVDGCGEFTPN-GDQGTKEAFICEACGCHRNFHRKQVI 72 58***********************8.9999*****************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	2.3E-27	20	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	2.4E-25	20	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	9.0E-16	21	71	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.712	21	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 132 aa Download sequence Send to blast
MANSDSKSKP LNEESRIIAE YRECWRNHAV LTGGHAVDGC GEFTPNGDQG TKEAFICEAC 60 GCHRNFHRKQ VIMRNGTILL DSHHSPPPPY GLYGAPYTSV SDEESLYNGS SSEKKMKARK 120 RPKRGTSMRN KK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011036340.1	1e-96	PREDICTED: zinc-finger homeodomain protein 2-like
TrEMBL	B9IPC1	2e-92	B9IPC1_POPTR; Uncharacterized protein
STRING	POPTR_0019s03790.1	3e-93	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	1e-21	homeobox protein 21