PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026598.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GeBP
Protein Properties Length: 235aa    MW: 27418.7 Da    PI: 10.5331
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026598.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF57347.84e-1583168297
       DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 
                  +f+rlws+e +++lL+G+  f+ k g       +af+e++k+ i+++vsk+ql +Ki + K+ fkk+ k     +   f ++  qk+++lsk iW+
  CCG026598.1  83 RFKRLWSQENKVALLKGIKIFE-KVGI-----PEAFFEYIKDDIHIDVSKKQLNSKISKHKREFKKNIKA----NRCIFGNSYKQKVYNLSKLIWD 168
                  79***************99994.4553.....479*********************************99....999******************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045045.8E-1284168IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MALGSSPSSS KEEETNKFSL SVESISEQED SRKTEKEAIA KKLKRKVSGD IEDTKRKKKK  60
RKKNKKKKQQ QQQQHCNPNE STRFKRLWSQ ENKVALLKGI KIFEKVGIPE AFFEYIKDDI  120
HIDVSKKQLN SKISKHKREF KKNIKANRCI FGNSYKQKVY NLSKLIWDVE AKGSNEVIAK  180
ELKASDSDEG ITKKLKVLES YFRTDGKETE MKKYFILGLN SLKGSKKKEM IKEYW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14362KRKVSGDIEDTKRKKKKRKK
24365KRKVSGDIEDTKRKKKKRKKNKK
35467KRKKKKRKKNKKKK
45560RKKKKR
55568RKKKKRKKNKKKKQ
65661KKKKRK
75662KKKKRKK
85663KKKKRKKN
95765KKKRKKNKK
105862KKRKK
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66420.12e-09DNA-binding storekeeper protein-related transcriptional regulator