PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026764.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

FAR1

Protein Properties

Length: 226aa MW: 25535.9 Da PI: 6.3714

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026764.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	83.7	3e-26	61	150	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY eYA++vGF vr+ + ++s +g++ r++ C+k+g++ +++++ e+++r + r gCka++ vk+ek+gkw+vt++e++HnH+l+ CCG026764.1 61 RFYTEYARRVGFFVRVMQRRRSGIDGRTLARRLGCNKQGFSPNHRTDIGPEKKPRLSARDGCKATILVKMEKSGKWVVTRFEKDHNHPLV 150 5***************************************************************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-24	61	150	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 226 aa Download sequence Send to blast
MSNILFDAST PRPPSLSILM DLDKGVVDTA TCCVEEEETV GDGIAEPDVG MEFESEDAAR 60 RFYTEYARRV GFFVRVMQRR RSGIDGRTLA RRLGCNKQGF SPNHRTDIGP EKKPRLSARD 120 GCKATILVKM EKSGKWVVTR FEKDHNHPLV VTTSGFSASG DKDKKIEELT QELEHQEQLC 180 TTYREKLLSF MNNVVEETEE LASKIQVIVD SVRKVESEVQ KVPRHG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009604.1	1e-168	PREDICTED: protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	4e-23	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A2K1XXL6	1e-142	A0A2K1XXL6_POPTR; Uncharacterized protein
STRING	POPTR_0014s17510.1	1e-141	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.1	2e-62	FAR1 family protein

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]