PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026785.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 433aa MW: 47948.4 Da PI: 9.342

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026785.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.3e-05	376	396	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ CgksF r++ L++H++++ CCG026785.1 376 TCSQCGKSF-RPEKLHSHMKSC 396 6******.********98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF06136	9.9E-40	24	297	IPR010369	Protein of unknown function DUF966

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MEVASGIPTS CSSSGAGAGE VRRIHIIYFL SHNLGRIDQH PHLIRVHHSN RKGVYLRDVK 60 RWLADLRGKD LPKAFAWSYK RRYKKGYVWQ DLLDDDLITP ISDNEYVLKG SKILVPPANP 120 VVGSADGEKQ ENTGVELVEN KAQNHEQRPS PNQICKDTTS RNTSSTEIPK ESPTFSSEIS 180 TLTDDSIEEE EEEKEEDACK RNDSRDQEQI DNKVEHSSFY TIFLGKSKKN QDDRKDNTSS 240 IEKMGTPSSF PSPSSSQSTS TKSKSYSTGT SKVLRNLITC GAVDTNDAAL VLQSQKNKNK 300 YKPIDKPAGH ICKGEELGGS ARVFGTPWNQ VQQQRQHSTA NARKSFDGAR SSKKQHNGFG 360 SPKVVSSVYK PVAVPTCSQC GKSFRPEKLH SHMKSCRGLK VLAKAASTYV EKTPSPSHNP 420 VDSASMDGYF LTN

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MEVASGIPTS CSSSGAGAGE VRRIHIIYFL SHNLGRIDQH PHLIRVHHSN RKGVYLRDVK  60
RWLADLRGKD LPKAFAWSYK RRYKKGYVWQ DLLDDDLITP ISDNEYVLKG SKILVPPANP  120
VVGSADGEKQ ENTGVELVEN KAQNHEQRPS PNQICKDTTS RNTSSTEIPK ESPTFSSEIS  180
TLTDDSIEEE EEEKEEDACK RNDSRDQEQI DNKVEHSSFY TIFLGKSKKN QDDRKDNTSS  240
IEKMGTPSSF PSPSSSQSTS TKSKSYSTGT SKVLRNLITC GAVDTNDAAL VLQSQKNKNK  300
YKPIDKPAGH ICKGEELGGS ARVFGTPWNQ VQQQRQHSTA NARKSFDGAR SSKKQHNGFG  360
SPKVVSSVYK PVAVPTCSQC GKSFRPEKLH SHMKSCRGLK VLAKAASTYV EKTPSPSHNP  420
VDSASMDGYF LTN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009641.1	0.0	PREDICTED: uncharacterized protein LOC105114701
TrEMBL	A0A3N7EDR3	0.0	A0A3N7EDR3_POPTR; Uncharacterized protein
STRING	POPTR_0001s23880.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8378	16	20