PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026838.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

AP2

Protein Properties

Length: 558aa MW: 61164.3 Da PI: 5.5976

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026838.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	47.1	6.1e-15	281	330	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g CCG026838.1 281 YRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 330 9*************988532...5**********************998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	10.665	163	244	IPR001471	AP2/ERF domain
SMART	SM00380	0.0012	163	250	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.2E-6	215	245	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	6.15E-7	215	246	IPR016177	DNA-binding domain
CDD	cd00018	1.32E-24	279	338	No hit	No description
SuperFamily	SSF54171	6.54E-18	279	339	IPR016177	DNA-binding domain
PROSITE profile	PS51032	19.375	280	338	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	4.2E-18	280	338	IPR001471	AP2/ERF domain
SMART	SM00380	1.6E-32	280	344	IPR001471	AP2/ERF domain
Pfam	PF00847	1.5E-9	281	330	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 558 aa Download sequence Send to blast
MNSNNWLSFP LSPTHPTLPA HLHASHPHQF SLGLVNDSME NPFQTQEWSL LNTQGNNEVP 60 KVADFLGVNK SENQSDLVAF NEIQANDSEY LFSSNSLLPV QNAVVAASTN YEFQENSSNL 120 QLSMGSASGK GSKCETSGDN STNSVEAAAP RRTLDTFGQR TSIYRGVTSF CAYAGIDGQE 180 GMKLIYGIIV AEEKVNPGKE DKLSLSSVNF LTSSGGYDKE DKAARAYDLA ALKYWGTSTT 240 TNFPISNYEK ELEDMKQMTR QEFVASIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV 300 AGNKDLYLGT FSTEEEAAEA YDIAAIKFRG LNAVTNFDMN RYDVKSILES NSLPIGGGAA 360 KRLKEAQAIE SSQKREEIIA LGSSYPYGST SSSSRLQAYS LMQKPFEQPQ PLLTLQNQDI 420 SQYTQDSSFQ QNYLQTQLHL HQLSAGSNYL HNNQSSQNPQ YYSSYIQNNP ALLHGFWNMG 480 SSSSLMENNV SSSGSYSTGG YLGNGLGMAT NSTGSNAVAE ELPLVKVDYD MPSGGYGGWS 540 GESLQGSNPG VFTMWNHE

Sequence ? help Back to Top

Protein Sequence Length: 558 aa Download sequence Send to blast

MNSNNWLSFP LSPTHPTLPA HLHASHPHQF SLGLVNDSME NPFQTQEWSL LNTQGNNEVP  60
KVADFLGVNK SENQSDLVAF NEIQANDSEY LFSSNSLLPV QNAVVAASTN YEFQENSSNL  120
QLSMGSASGK GSKCETSGDN STNSVEAAAP RRTLDTFGQR TSIYRGVTSF CAYAGIDGQE  180
GMKLIYGIIV AEEKVNPGKE DKLSLSSVNF LTSSGGYDKE DKAARAYDLA ALKYWGTSTT  240
TNFPISNYEK ELEDMKQMTR QEFVASIRRK SSGFSRGASM YRGVTRHHQH GRWQARIGRV  300
AGNKDLYLGT FSTEEEAAEA YDIAAIKFRG LNAVTNFDMN RYDVKSILES NSLPIGGGAA  360
KRLKEAQAIE SSQKREEIIA LGSSYPYGST SSSSRLQAYS LMQKPFEQPQ PLLTLQNQDI  420
SQYTQDSSFQ QNYLQTQLHL HQLSAGSNYL HNNQSSQNPQ YYSSYIQNNP ALLHGFWNMG  480
SSSSLMENNV SSSGSYSTGG YLGNGLGMAT NSTGSNAVAE ELPLVKVDYD MPSGGYGGWS  540
GESLQGSNPG VFTMWNHE

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269\|PubMed:15454085, ECO:0000269\|PubMed:15635403, ECO:0000269\|PubMed:16424342, ECO:0000269\|PubMed:20190735}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.
UniProt	INDUCTION: By auxin accumulation. {ECO:0000269\|PubMed:15454085}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216409	1e-106	AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011037837.1	0.0	PREDICTED: AP2-like ethylene-responsive transcription factor PLT2
Swissprot	Q5YGP7	0.0	PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2
Swissprot	Q5YGP8	0.0	PLET1_ARATH; AP2-like ethylene-responsive transcription factor PLT1
TrEMBL	A0A2K2BQZ1	0.0	A0A2K2BQZ1_POPTR; Uncharacterized protein
STRING	POPTR_0001s05580.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4942	31	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G51190.1	0.0	AP2 family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Lee DK,Sieburth LE The bps signal: embryonic arrest from an auxin-independent mechanism in bypass triple mutants. Plant Signal Behav, 2012. 7(6): p. 698-700 [PMID:22580686] Hong LW,Yan DW,Liu WC,Chen HG,Lu YT TIME FOR COFFEE controls root meristem size by changes in auxin accumulation in Arabidopsis. J. Exp. Bot., 2014. 65(1): p. 275-86 [PMID:24277277] Tian H,Jia Y,Niu T,Yu Q,Ding Z The key players of the primary root growth and development also function in lateral roots in Arabidopsis. Plant Cell Rep., 2014. 33(5): p. 745-53 [PMID:24504658] Zhao Q, et al. Sulfur nutrient availability regulates root elongation by affecting root indole-3-acetic acid levels and the stem cell niche. J Integr Plant Biol, 2014. 56(12): p. 1151-63 [PMID:24831283] Huang JB, et al. ROP3 GTPase contributes to polar auxin transport and auxin responses and is important for embryogenesis and seedling growth in Arabidopsis. Plant Cell, 2014. 26(9): p. 3501-18 [PMID:25217509] Yang S, et al. The Arabidopsis SWI2/SNF2 Chromatin Remodeling ATPase BRAHMA Targets Directly to PINs and Is Required for Root Stem Cell Niche Maintenance. Plant Cell, 2015. 27(6): p. 1670-80 [PMID:25991732] Jia Y, et al. The Arabidopsis thaliana elongator complex subunit 2 epigenetically affects root development. J. Exp. Bot., 2015. 66(15): p. 4631-42 [PMID:25998905] Zhang M, et al. A tetratricopeptide repeat domain-containing protein SSR1 located in mitochondria is involved in root development and auxin polar transport in Arabidopsis. Plant J., 2015. 83(4): p. 582-99 [PMID:26072661] Shinohara H,Mori A,Yasue N,Sumida K,Matsubayashi Y Identification of three LRR-RKs involved in perception of root meristem growth factor in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(14): p. 3897-902 [PMID:27001831] Ou Y, et al. RGF1 INSENSITIVE 1 to 5, a group of LRR receptor-like kinases, are essential for the perception of root meristem growth factor 1 in Arabidopsis thaliana. Cell Res., 2016. 26(6): p. 686-98 [PMID:27229312] García-Cruz KV, et al. The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components. Ann. Bot., 2018. [PMID:27474508] Santuari L, et al. The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots. Plant Cell, 2016. 28(12): p. 2937-2951 [PMID:27920338] Franssen HJ,Kulikova O,Willemsen V,Heidstra R Cis-regulatory PLETHORA promoter elements directing root and nodule expression are conserved between Arabidopsis thaliana and Medicago truncatula. Plant Signal Behav, 2017. 12(2): p. e1278102 [PMID:28067580] Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis . J Integr Plant Biol, 2017. 59(1): p. 30-43 [PMID:28074634] Du Y,Scheres B PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714 [PMID:29078398] Bustillo-Avendaño E, et al. Regulation of Hormonal Control, Cell Reprogramming, and Patterning during De Novo Root Organogenesis. Plant Physiol., 2018. 176(2): p. 1709-1727 [PMID:29233938] Ercoli MF, et al. GIF Transcriptional Coregulators Control Root Meristem Homeostasis. Plant Cell, 2018. 30(2): p. 347-359 [PMID:29352064] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]