PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026915.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

S1Fa-like

Protein Properties

Length: 89aa MW: 9818.56 Da PI: 10.4818

Description

S1Fa-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026915.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	S1FA	139.4	7.8e-44	24	89	5	70
S1FA 5 kveakGlnPGlivllvvgglllvflvgnyilyvyaqknlPPrkkkPvskkklkreklkqGvavPGe 70 +e kGlnPGlivllv+gglll flvgn++ly+yaqk+lPPrkkkPvskkk+kre+lkqGv++PGe CCG026915.1 24 DAEPKGLNPGLIVLLVIGGLLLSFLVGNFVLYTYAQKTLPPRKKKPVSKKKMKRERLKQGVSAPGE 89 6799*************************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04689	1.4E-40	25	89	IPR006779	DNA binding protein S1FA

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 89 aa Download sequence Send to blast
MADDFEFSDQ SPPSFQNMGN VIKDAEPKGL NPGLIVLLVI GGLLLSFLVG NFVLYTYAQK 60 TLPPRKKKPV SKKKMKRERL KQGVSAPGE

Functional Description ? help Back to Top
Source	Description
UniProt	DNA-binding protein that specifically recognizes a negative element (S1F) within the RPS1 promoter. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF144583	1e-140	EF144583.1 Populus trichocarpa clone WS01111_F03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011004618.1	3e-58	PREDICTED: DNA-binding protein S1FA-like
Swissprot	Q7XLX6	7e-16	S1FA2_ORYSJ; DNA-binding protein S1FA2
TrEMBL	A9P8W5	7e-41	A9P8W5_POPTR; S1Fa-like family protein
STRING	POPTR_0016s08890.1	1e-41	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5409	33	55

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]