PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026922.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 192aa MW: 21621.6 Da PI: 10.074

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026922.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64	4.4e-20	11	74	66	128
NAM 66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ky+ g r+nra++sgyWkatg++k ++++ +++++g+kk Lvf kgr pkg k W+mheyrl CCG026922.1 11 RKYPIGARPNRAAASGYWKATGTNKLIINScGTTKIGVKKALVFCKGRPPKGMKIGWIMHEYRL 74 7999*********************99978889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	23.684	1	99	IPR003441	NAC domain
SuperFamily	SSF101941	1.06E-21	11	80	IPR003441	NAC domain
Pfam	PF02365	1.7E-9	19	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MNGISLRQGI RKYPIGARPN RAAASGYWKA TGTNKLIINS CGTTKIGVKK ALVFCKGRPP 60 KGMKIGWIMH EYRLLDAWNN SKSKGSMRDF PSTERVSSIN FPSTDKSSTS LGNLLNSLKR 120 KHVERDQQRE NCFPRSKKLR TKADMEEEGV LSIGNDGTDE NLCGMPDQSE SSCFSPVQWN 180 PLVQYQEYNH FE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	8e-22	11	76	81	144	NO APICAL MERISTEM PROTEIN
1ut4_B	8e-22	11	76	81	144	NO APICAL MERISTEM PROTEIN
1ut7_A	8e-22	11	76	81	144	NO APICAL MERISTEM PROTEIN
1ut7_B	8e-22	11	76	81	144	NO APICAL MERISTEM PROTEIN
3swm_A	8e-22	11	76	84	147	NAC domain-containing protein 19
3swm_B	8e-22	11	76	84	147	NAC domain-containing protein 19
3swm_C	8e-22	11	76	84	147	NAC domain-containing protein 19
3swm_D	8e-22	11	76	84	147	NAC domain-containing protein 19
3swp_A	8e-22	11	76	84	147	NAC domain-containing protein 19
3swp_B	8e-22	11	76	84	147	NAC domain-containing protein 19
3swp_C	8e-22	11	76	84	147	NAC domain-containing protein 19
3swp_D	8e-22	11	76	84	147	NAC domain-containing protein 19
4dul_A	8e-22	11	76	81	144	NAC domain-containing protein 19
4dul_B	8e-22	11	76	81	144	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443774.1	4e-64	NAC domain-containing protein 83
TrEMBL	A0A3N7G5A9	1e-63	A0A3N7G5A9_POPTR; Uncharacterized protein
STRING	POPTR_0016s08970.1	9e-64	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	2e-29	NAC-like, activated by AP3/PI