PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026924.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 228aa MW: 25872.4 Da PI: 10.1647

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026924.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	63.6	6.3e-20	11	74	66	128
NAM 66 kkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ky+ g r+nra++sgyWkatg++k ++++ +++++g+kk Lvf kgr pkg k W+mheyrl CCG026924.1 11 RKYPIGARPNRAAASGYWKATGTNKLIINScGTTKIGVKKALVFCKGRPPKGMKIGWIMHEYRL 74 7999*********************99978889*************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	29.229	1	100	IPR003441	NAC domain
SuperFamily	SSF101941	4.58E-26	11	100	IPR003441	NAC domain
Pfam	PF02365	2.4E-9	19	74	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MNGISLRQGI RKYPIGARPN RAAASGYWKA TGTNKLIINS CGTTKIGVKK ALVFCKGRPP 60 KGMKIGWIMH EYRLLDAWNN SKRKGSMRLD DWVLCRVRQK NSIPRSTWED QNVPSSAPPG 120 FFPRDFPSTE RVSSINFPST DKSSTSLGNL LNSLKRKHVE RDQQRENCFP RSKKLRTKAD 180 MEEEGVLSIG NDGTDENLCG MPDQSESSCF SPVQWNPLVQ YQEYNHFE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	4e-31	11	102	81	167	NO APICAL MERISTEM PROTEIN
1ut4_B	4e-31	11	102	81	167	NO APICAL MERISTEM PROTEIN
1ut7_A	4e-31	11	102	81	167	NO APICAL MERISTEM PROTEIN
1ut7_B	4e-31	11	102	81	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-31	11	102	84	170	NAC domain-containing protein 19
3swm_B	4e-31	11	102	84	170	NAC domain-containing protein 19
3swm_C	4e-31	11	102	84	170	NAC domain-containing protein 19
3swm_D	4e-31	11	102	84	170	NAC domain-containing protein 19
3swp_A	4e-31	11	102	84	170	NAC domain-containing protein 19
3swp_B	4e-31	11	102	84	170	NAC domain-containing protein 19
3swp_C	4e-31	11	102	84	170	NAC domain-containing protein 19
3swp_D	4e-31	11	102	84	170	NAC domain-containing protein 19
4dul_A	4e-31	11	102	81	167	NAC domain-containing protein 19
4dul_B	4e-31	11	102	81	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024443774.1	1e-148	NAC domain-containing protein 83
TrEMBL	A0A3N7G5A9	1e-148	A0A3N7G5A9_POPTR; Uncharacterized protein
STRING	POPTR_0016s08970.1	1e-141	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2416	29	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	4e-38	NAC-like, activated by AP3/PI