PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026951.2

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 835aa MW: 91755.4 Da PI: 7.2899

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026951.2	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	27.6	5e-09	646	683	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ +qV++WF N R + CCG026951.2 646 FEHflHPYPTDTDKHMLATRTGLSRNQVSNWFINARVR 683 564459******************************87 PP
2	BELL	97.3	1.2e-31	502	570	4	72
BELL 4 elqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 e q+kkakLl l+eeV++rYkqy++q+q+v+ssFe va l +a+pY+slAlk++S +Fr+Lk i+eq+ CCG026951.2 502 EYQQKKAKLLLLQEEVCRRYKQYHQQMQMVASSFESVASLSAATPYVSLALKTVSSNFRSLKHGISEQL 570 789****************************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.0E-36	406	568	IPR006563	POX domain
Pfam	PF07526	3.4E-37	411	567	IPR006563	POX domain
PROSITE profile	PS50071	11.726	624	687	IPR001356	Homeobox domain
SMART	SM00389	8.1E-8	627	691	IPR001356	Homeobox domain
CDD	cd00086	9.67E-11	627	688	No hit	No description
SuperFamily	SSF46689	2.1E-16	629	693	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.3E-27	630	691	IPR009057	Homeodomain-like
Pfam	PF05920	5.1E-18	644	683	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 835 aa Download sequence Send to blast
MESRSFRPES HVAQQSRRDK LRGQQSLTSV QYLDDYPKGL ARVSVNPGLS PDLVHVRNIR 60 NDNTIYDSTM FSPEILNFAT SSHVLSAPKV SIVDQELGAV PLNRPILAED SSFTGMTSHP 120 VLSNFNASHK ASSCDPQGCG NWRSLDSQQS YDLMVNYAGG SVGGERNQKP VFVGEVLSNN 180 ARVSNISTSR QYLMPSYNGN QNVQLPSTLR NTFGEISSED SIKQLRVMQV PSLPPYQNAA 240 QDVIPSGCFR PIMNERVLHP SFVTDSTASH FDNNGSTWMS RPLENYHHWS TGELGLVERT 300 SDQEMMTITS DANNQGLSLS LSSINPPSKV EVAHFGEECA SEHLQLKVAD RVSQESHQDS 360 KFFKSSSLCA LPKPSIMNKS CGKSIHNIVG TSTHALRNTG PLGPFTGYAT ILKSSKFLKP 420 AQQLLEEFSS TGPKHTRTFE MSDDQVTAPA LADIINEANE KAGTNAKNYS GIPSSIFYCS 480 NKASSGDDVG GSGGSCGSYG PEYQQKKAKL LLLQEEVCRR YKQYHQQMQM VASSFESVAS 540 LSAATPYVSL ALKTVSSNFR SLKHGISEQL KLVTKAVGDD LFSRNTVAVG SKGDTSTSRS 600 IYMDQSIQKN KSGGVSVGYH EPQQHIWRPQ RGLPERSVAI LRAWLFEHFL HPYPTDTDKH 660 MLATRTGLSR NQVSNWFINA RVRVWKPMVE EIHMLETKGS AEISGKNDGN SAEGNIQSND 720 EQTSKKLGTN SMLNKQLECS GIVSSGSSGE QLDEEQWSEG KQSRVEFQVP PTTMDGSLMN 780 FLPYQRSGID NGGAVSLTLG LRQGIENAQH QIQLQQHNGQ FKQSFGGQMI HDFVG

Sequence ? help Back to Top

Protein Sequence Length: 835 aa Download sequence Send to blast

MESRSFRPES HVAQQSRRDK LRGQQSLTSV QYLDDYPKGL ARVSVNPGLS PDLVHVRNIR  60
NDNTIYDSTM FSPEILNFAT SSHVLSAPKV SIVDQELGAV PLNRPILAED SSFTGMTSHP  120
VLSNFNASHK ASSCDPQGCG NWRSLDSQQS YDLMVNYAGG SVGGERNQKP VFVGEVLSNN  180
ARVSNISTSR QYLMPSYNGN QNVQLPSTLR NTFGEISSED SIKQLRVMQV PSLPPYQNAA  240
QDVIPSGCFR PIMNERVLHP SFVTDSTASH FDNNGSTWMS RPLENYHHWS TGELGLVERT  300
SDQEMMTITS DANNQGLSLS LSSINPPSKV EVAHFGEECA SEHLQLKVAD RVSQESHQDS  360
KFFKSSSLCA LPKPSIMNKS CGKSIHNIVG TSTHALRNTG PLGPFTGYAT ILKSSKFLKP  420
AQQLLEEFSS TGPKHTRTFE MSDDQVTAPA LADIINEANE KAGTNAKNYS GIPSSIFYCS  480
NKASSGDDVG GSGGSCGSYG PEYQQKKAKL LLLQEEVCRR YKQYHQQMQM VASSFESVAS  540
LSAATPYVSL ALKTVSSNFR SLKHGISEQL KLVTKAVGDD LFSRNTVAVG SKGDTSTSRS  600
IYMDQSIQKN KSGGVSVGYH EPQQHIWRPQ RGLPERSVAI LRAWLFEHFL HPYPTDTDKH  660
MLATRTGLSR NQVSNWFINA RVRVWKPMVE EIHMLETKGS AEISGKNDGN SAEGNIQSND  720
EQTSKKLGTN SMLNKQLECS GIVSSGSSGE QLDEEQWSEG KQSRVEFQVP PTTMDGSLMN  780
FLPYQRSGID NGGAVSLTLG LRQGIENAQH QIQLQQHNGQ FKQSFGGQMI HDFVG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrs_A	2e-15	633	690	1	58	Homeobox protein Meis1
4xrs_B	2e-15	633	690	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009727.1	0.0	PREDICTED: BEL1-like homeodomain protein 4 isoform X1
TrEMBL	B9HQD0	0.0	B9HQD0_POPTR; Uncharacterized protein
STRING	POPTR_0009s01520.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3481	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	8e-77	BEL1-like homeodomain 8