PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG026952.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 826aa MW: 91480.5 Da PI: 6.6126

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG026952.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	26.9	8.1e-09	636	673	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yp+ +++ LA+++gL+ qV++WF N R + CCG026952.1 636 FEHflHPYPTDTDKHMLATQTGLSRYQVSNWFINARVR 673 554458******************************88 PP
2	BELL	77	2.8e-25	498	565	5	72
BELL 5 lqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 q+ kakLl l+eeV +rYkqy++q+++v+s Fe vagl +a+ Y+s+A ka+S +F ++k ai++q+ CCG026952.1 498 YQQMKAKLLYLQEEVFRRYKQYHQQMEMVASFFESVAGLSAATRYISVAVKAVSGNFGSIKHAISDQL 565 6889*************************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	4.6E-24	399	563	IPR006563	POX domain
Pfam	PF07526	3.3E-33	404	562	IPR006563	POX domain
CDD	cd00086	7.72E-11	617	678	No hit	No description
SMART	SM00389	2.8E-8	617	681	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.5E-16	619	683	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	8.4E-27	620	681	IPR009057	Homeodomain-like
Pfam	PF05920	1.4E-17	634	673	IPR008422	Homeobox KN domain
PROSITE profile	PS50071	11.467	636	677	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 826 aa Download sequence Send to blast
METKSFQPET HVAQRSRRDK LRFQQSLASV QHLEDFGNDL DQLAVDPLLT PDLVQVRHTR 60 NGNMLYDPTF LSSAVLDFAT SSNVLSAQRG AMVDQELGPA HLHSPIAAEN SSFTNMPLPV 120 LSNLNASPTA SNDDAQGCGN WTKLGSEQGY DLTVDYTGGS VDGERNQKLM SAVEVLSNNA 180 RVTDISTYTQ YFKPSYNEDR DFELQSSLAE PSDEFSSQDN QKQLRERQFT THPLNQNTLQ 240 DVVTSGLVGR TKEIILHPSF ENQSSTLHFN DPNARIRRPN ENSHQWSCEL GLITRKSSQE 300 LRTIPNYANT QGLSLSLSSN QSSKVNETRS GEANESECLQ SKNRLSKEPH HVSKVSKASY 360 MCPLPRPSIL SKGCGKSLHD LPGDATNILR NAGPLGPFTG YATILSSSRF LKPAQELMDE 420 FCGVKGLGLV RTSELPKRIG GEASPPVLGD SVNEADTGDE ANDDNNLGAS PFTSCRSNEE 480 IGRCGVGNSS SKSYMPAYQQ MKAKLLYLQE EVFRRYKQYH QQMEMVASFF ESVAGLSAAT 540 RYISVAVKAV SGNFGSIKHA ISDQLKHVTK ALGENLLSPN TDGSRTVGSL RYKDQSFQKN 600 NSGGPNVGYL EPQEHIWRPQ RGLPERAVVI LRAWLFEHFL HPYPTDTDKH MLATQTGLSR 660 YQVSNWFINA RVRLWKPMVE EIHTLETKGL LENNLSSGKN GGNSAEGASQ PDGDHRASKE 720 LDTSYMPSKQ LECSSNIGSS GGSRDQLDAE QWNQEKRSRV ESQAPIRADR SLMNFMLYQK 780 PGSENGGLGA VSLTLGLRHG AENAQHEQLQ HSENPLRRHY WRPDDS

Sequence ? help Back to Top

Protein Sequence Length: 826 aa Download sequence Send to blast

METKSFQPET HVAQRSRRDK LRFQQSLASV QHLEDFGNDL DQLAVDPLLT PDLVQVRHTR  60
NGNMLYDPTF LSSAVLDFAT SSNVLSAQRG AMVDQELGPA HLHSPIAAEN SSFTNMPLPV  120
LSNLNASPTA SNDDAQGCGN WTKLGSEQGY DLTVDYTGGS VDGERNQKLM SAVEVLSNNA  180
RVTDISTYTQ YFKPSYNEDR DFELQSSLAE PSDEFSSQDN QKQLRERQFT THPLNQNTLQ  240
DVVTSGLVGR TKEIILHPSF ENQSSTLHFN DPNARIRRPN ENSHQWSCEL GLITRKSSQE  300
LRTIPNYANT QGLSLSLSSN QSSKVNETRS GEANESECLQ SKNRLSKEPH HVSKVSKASY  360
MCPLPRPSIL SKGCGKSLHD LPGDATNILR NAGPLGPFTG YATILSSSRF LKPAQELMDE  420
FCGVKGLGLV RTSELPKRIG GEASPPVLGD SVNEADTGDE ANDDNNLGAS PFTSCRSNEE  480
IGRCGVGNSS SKSYMPAYQQ MKAKLLYLQE EVFRRYKQYH QQMEMVASFF ESVAGLSAAT  540
RYISVAVKAV SGNFGSIKHA ISDQLKHVTK ALGENLLSPN TDGSRTVGSL RYKDQSFQKN  600
NSGGPNVGYL EPQEHIWRPQ RGLPERAVVI LRAWLFEHFL HPYPTDTDKH MLATQTGLSR  660
YQVSNWFINA RVRLWKPMVE EIHTLETKGL LENNLSSGKN GGNSAEGASQ PDGDHRASKE  720
LDTSYMPSKQ LECSSNIGSS GGSRDQLDAE QWNQEKRSRV ESQAPIRADR SLMNFMLYQK  780
PGSENGGLGA VSLTLGLRHG AENAQHEQLQ HSENPLRRHY WRPDDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4xrm_A	9e-16	623	681	5	63	Homeobox protein Meis2
4xrm_B	9e-16	623	681	5	63	Homeobox protein Meis2
4xrs_A	8e-16	623	680	1	58	Homeobox protein Meis1
4xrs_B	8e-16	623	680	1	58	Homeobox protein Meis1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009725.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
Refseq	XP_011009726.1	0.0	PREDICTED: BEL1-like homeodomain protein 9
TrEMBL	A0A2K1Z0U8	0.0	A0A2K1Z0U8_POPTR; Uncharacterized protein
STRING	POPTR_0009s01530.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3481	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27990.1	2e-77	BEL1-like homeodomain 8