PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG026994.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 96aa    MW: 10999.3 Da    PI: 8.4733
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG026994.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.1e-08652247
                     SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                      +WT    +l+ +a + +  +   +W+  ar +g  +t +++k ++q++
      CCG026994.1  6 SNWTSKQNKLFENALAIYDQEspdRWHHLARAVG--KTVEEVKKHYQML 52
                     58*****************99************8..9**********87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007175.8E-6455IPR001005SANT/Myb domain
SuperFamilySSF466897.87E-12660IPR009057Homeodomain-like
CDDcd001671.49E-4753No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 96 aa     Download sequence    Send to blast
MASGSSNWTS KQNKLFENAL AIYDQESPDR WHHLARAVGK TVEEVKKHYQ MLVEDVQQIE  60
AGEIPLPNYT RRSGASNKSY HCIDDQAKRV KNLNLN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-278951192RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453601e-152EF145360.1 Populus trichocarpa clone WS01123_L07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011024437.18e-68PREDICTED: protein RADIALIS-like 3
SwissprotQ1A1734e-29RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA9PAX01e-63A9PAX0_POPTR; MYB-like family protein
STRINGPOPTR_0002s26160.12e-64(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.22e-31RAD-like 6