PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027026.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

M-type_MADS

Protein Properties

Length: 407aa MW: 46447.4 Da PI: 7.9486

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027026.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	54	2.1e-17	11	52	3	44
--SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstg 44 i + r tf kR++g+lKKA+E S+LC+++++viif+++ CCG027026.1 11 IRKEKSRMLTFRKRKAGLLKKASEFSILCGVDACVIIFGPKE 52 56677899*******************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	18.054	1	53	IPR002100	Transcription factor, MADS-box
SMART	SM00432	4.8E-20	1	66	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.26E-19	1	88	IPR002100	Transcription factor, MADS-box
CDD	cd00266	4.61E-24	2	92	No hit	No description
PRINTS	PR00404	6.3E-9	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	1.6E-18	11	53	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-9	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	6.3E-9	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence Send to blast
MGQKRIKMEL IRKEKSRMLT FRKRKAGLLK KASEFSILCG VDACVIIFGP KEKDDHQPVA 60 PETWPPSSEE VRCIISRYKG SDQPRRCYQV SDYFADKKKQ IDSELARLHK QIIKTKYPAW 120 DDRLNSLYAD QLRVLVGHLD AKIDLTEKKL GSFNSNQYSM GAPGVQAASL SPSVSHDNME 180 SYMKSRDDNL LQLIHNSNPF DAQPAMVFYP EQSSHVTNLL ERKYSNGCPT DLQVYYEPRP 240 LDDQLLVGFQ SKQTSYRTTR NASFWESNNG NCYSTDLQLY LEPNPLNIVQ PPMHFQPKQN 300 VRRTSSYLHA MEDAIMKMAC DQNTSDQFGC KLSSSSNLPC ANRTPWMWDN VWFNNADSSV 360 SYIAPTTQPI MSSIQFPMSS FPHQMQSSEA SDFTGNLEFE GKGQGYN

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence Send to blast

MGQKRIKMEL IRKEKSRMLT FRKRKAGLLK KASEFSILCG VDACVIIFGP KEKDDHQPVA  60
PETWPPSSEE VRCIISRYKG SDQPRRCYQV SDYFADKKKQ IDSELARLHK QIIKTKYPAW  120
DDRLNSLYAD QLRVLVGHLD AKIDLTEKKL GSFNSNQYSM GAPGVQAASL SPSVSHDNME  180
SYMKSRDDNL LQLIHNSNPF DAQPAMVFYP EQSSHVTNLL ERKYSNGCPT DLQVYYEPRP  240
LDDQLLVGFQ SKQTSYRTTR NASFWESNNG NCYSTDLQLY LEPNPLNIVQ PPMHFQPKQN  300
VRRTSSYLHA MEDAIMKMAC DQNTSDQFGC KLSSSSNLPC ANRTPWMWDN VWFNNADSSV  360
SYIAPTTQPI MSSIQFPMSS FPHQMQSSEA SDFTGNLEFE GKGQGYN

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KC297706	0.0	KC297706.1 Populus tomentosa AGL24 gene, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011024498.1	0.0	PREDICTED: myocyte-specific enhancer factor 2-like
TrEMBL	B9GRC0	0.0	B9GRC0_POPTR; Uncharacterized protein
STRING	POPTR_0002s25700.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF534	31	111

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G55690.1	2e-29	M-type_MADS family protein