PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027217.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 542aa    MW: 59078.9 Da    PI: 8.3077
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027217.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP236.61.1e-11172228155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV++++++gr++A+++d  +     ++ k  + g ++ +e+Aa+a++ a++k++g
  CCG027217.1 172 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQSrKGRQ-GGYDKEEKAARAYDLAALKYWG 228
                  57*******************5444.2455536655.779999**************98 PP
2AP247.15.7e-15271322155
          AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG027217.1 271 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 322
                  57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.67E-19172238No hitNo description
SuperFamilySSF541713.92E-15172238IPR016177DNA-binding domain
PfamPF008474.0E-9172228IPR001471AP2/ERF domain
SMARTSM003802.5E-23173242IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.2E-12173237IPR001471AP2/ERF domain
PROSITE profilePS5103217.477173236IPR001471AP2/ERF domain
PRINTSPR003672.4E-6174185IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18271332IPR016177DNA-binding domain
PfamPF008477.1E-10271322IPR001471AP2/ERF domain
CDDcd000186.45E-25271332No hitNo description
SMARTSM003801.5E-33272336IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18272331IPR001471AP2/ERF domain
PROSITE profilePS5103219.045272330IPR001471AP2/ERF domain
PRINTSPR003672.4E-6312332IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 542 aa     Download sequence    Send to blast
MDSSSHQNWL GFSLSNHHHM NNTISIPTSS DSSHLCLFEA FNATTTSAQE VNAVVAAGRA  60
TDISLFTASG PKLEDFLGGC TSTSPSQTPQ QQPLCGQFST ETPVTTTATT LSDSTGSEIY  120
DSELKTIAAS FLRGLASTDH QKIDITQKHQ QLLVQAEHAP KKTVETFGQR TSIYRGVTRH  180
RWTGRYEAHL WDNSCRREGQ SRKGRQGGYD KEEKAARAYD LAALKYWGPT TTTNFPVSNY  240
EKEIEGMKHM TRQEFVASLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG RVAGNKDLYL  300
GTFSTQEEAA EAYDIAAIKF RGLNAVTNFD MSRYDVKSIA NSNLPIGGIS GKSKNSSESA  360
SDSKSIDGSR SDDRDLSSAS SVTFASQPAT STLSFAIPIK QDPSDYWTNI LGYQNTATMN  420
NARNSSSSIV DPSTLFQSST SGPAFQSPTV FKMDFNANSS VNESNNSGLL FNGGYTQQQI  480
SGIGTSSPSS NIPFATPIAF HSNGNSYEGN PSYSSWIAQP LHSFQSAKPK LSVYQTPIFG  540
ME
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453130.0EF145313.1 Populus trichocarpa clone WS01123_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009808.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-163AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLA9PAS90.0A9PAS9_POPTR; AP2 family protein
STRINGPOPTR_0006s18330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-142AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]