PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027351.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 191aa MW: 21476.4 Da PI: 10.1271

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027351.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14	0.00015	40	62	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+ Fs++ L H++ H CCG027351.1 40 FRCKYCKNKFSTSQALGGHQNAH 62 89******************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.75E-6	36	68	No hit	No description
Gene3D	G3DSA:3.30.160.60	5.3E-4	36	66	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF13912	4.3E-6	40	64	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	11.198	40	67	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	42	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 191 aa Download sequence Send to blast
MSSLDRNRAS ENMDNSGSNN LDLNLMDFFE VKSNGGKRMF RCKYCKNKFS TSQALGGHQN 60 AHKRERAIEK RDKLLNEHMT FMPYPFWDMA MRSPMHYPSL GKTLGVDMSS MIHKPPYNHW 120 FRGGGIANGD HYSGLSRASI MNHQPRLHQL QNGGLQSLAS MVPNAIDLGG STSTSLKQKE 180 EGKGLELSLK L

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216763	1e-136	AC216763.1 Populus trichocarpa clone POP006-F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040766.1	1e-141	PREDICTED: zinc finger protein 1-like
TrEMBL	A0A2K1ZVZ8	1e-110	A0A2K1ZVZ8_POPTR; Uncharacterized protein
STRING	POPTR_0006s02960.1	1e-112	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17475	4	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G10970.1	1e-15	C2H2 family protein