PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027357.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 149aa MW: 16668.2 Da PI: 5.3391

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027357.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.7	0.00024	37	143	5	49
HHHHHHHHHHHHHHHHHHHHCTSCCC.................................................................TTS-STC CS HLH 5 hnerErrRRdriNsafeeLrellPkas..............................................................kapskKlsK 40 +rE +RR+r +a++++ el P+++ ++ ++ CCG027357.1 37 ETIRESKRRKRCPTALDKIEELTPSNPnfsftfdtqfggnsqeptpkfgsfnlvastqervddtghcfyqsledeegdhqeevdrqqggVSEGGVVNV 134 579**********************6558888888887777666666666666666666666666666666666666666666655555444445555 PP HHHHHHHHH CS HLH 41 aeiLekAve 49 + iL++ ++ CCG027357.1 135 SKILRRSID 143 555555555 PP

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MAEKNNIEKT SKSHDSSQGP PLLATSSSQK PKKEEHETIR ESKRRKRCPT ALDKIEELTP 60 SNPNFSFTFD TQFGGNSQEP TPKFGSFNLV ASTQERVDDT GHCFYQSLED EEGDHQEEVD 120 RQQGGVSEGG VVNVSKILRR SIDGIREVK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023903650.1	1e-18	vacuolar protein sorting-associated protein VTA1 homolog
TrEMBL	B9HDT2	5e-95	B9HDT2_POPTR; Uncharacterized protein
STRING	POPTR_0006s03000.1	8e-96	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16020	2	2