PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027410.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C2H2

Protein Properties

Length: 508aa MW: 54472.6 Da PI: 9.333

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027410.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16	3.4e-05	69	91	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r +L+ H r H CCG027410.1 69 FVCEICNKGFQRDQDLQLHRRGH 91 89******************988 PP
2	zf-C2H2	15.7	4.2e-05	145	167	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC+ C+k + +s+ k H++t+ CCG027410.1 145 WKCERCSKKYAVQSDWKAHMKTC 167 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	8.73E-6	68	91	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.3E-4	68	91	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SMART	SM00355	0.018	69	91	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.783	69	91	IPR007087	Zinc finger, C2H2
Pfam	PF12171	6.9E-5	69	91	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	71	91	IPR007087	Zinc finger, C2H2
SMART	SM00355	100	110	140	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.4E-5	133	166	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	8.73E-6	140	166	No hit	No description
SMART	SM00355	77	145	165	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MADVENSLRM KVSTASGEDT IVSSFGNQGM PLSVTVPQPK KKRNLPGMPD PDAEVVALSP 60 KSLLATNRFV CEICNKGFQR DQDLQLHRRG HNFPWKLKQR TNKEPRKRVY VCPEPSCVHH 120 NPVRALGDLT GIKKHFSRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGAR EYKCDCGTLF 180 SRRDSFITHR AFCDALTEES ARAQTLAITG NEGNGCDVKC VVASPPPPPL TPSTSVVSPG 240 LSVQSSELAE NSIRFSPPTP AAICLHDSST STSSASSTSN VFASKLASST ASLTAIPRQA 300 SLSPFPMFCG LAHSDCPPTM PTPKAMDPPS QTLSPSIYLP NPTSSLFPTN QDRRHYTPSP 360 QPAMSATALL KKAAQMGATT SNPSFLRGLG FPPSTNQDGN GNKWDMKPEN NTTFSAGLGL 420 VLPTSDIMMN SSSLFGKKPT TLDLLGLGLD AASSALLNYN GSDGFNVAAA AAAAYGGGRR 480 GNSEETWDGS HNNKVPERKP NGSTATSL

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MADVENSLRM KVSTASGEDT IVSSFGNQGM PLSVTVPQPK KKRNLPGMPD PDAEVVALSP  60
KSLLATNRFV CEICNKGFQR DQDLQLHRRG HNFPWKLKQR TNKEPRKRVY VCPEPSCVHH  120
NPVRALGDLT GIKKHFSRKH GEKKWKCERC SKKYAVQSDW KAHMKTCGAR EYKCDCGTLF  180
SRRDSFITHR AFCDALTEES ARAQTLAITG NEGNGCDVKC VVASPPPPPL TPSTSVVSPG  240
LSVQSSELAE NSIRFSPPTP AAICLHDSST STSSASSTSN VFASKLASST ASLTAIPRQA  300
SLSPFPMFCG LAHSDCPPTM PTPKAMDPPS QTLSPSIYLP NPTSSLFPTN QDRRHYTPSP  360
QPAMSATALL KKAAQMGATT SNPSFLRGLG FPPSTNQDGN GNKWDMKPEN NTTFSAGLGL  420
VLPTSDIMMN SSSLFGKKPT TLDLLGLGLD AASSALLNYN GSDGFNVAAA AAAAYGGGRR  480
GNSEETWDGS HNNKVPERKP NGSTATSL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	1e-36	141	207	3	69	Zinc finger protein JACKDAW
5b3h_F	1e-36	141	207	3	69	Zinc finger protein JACKDAW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040764.1	0.0	PREDICTED: zinc finger protein NUTCRACKER-like
Swissprot	Q9LVQ7	1e-132	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	B9IBT2	0.0	B9IBT2_POPTR; Uncharacterized protein
STRING	POPTR_0014s17900.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2218	32	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-110	indeterminate(ID)-domain 2

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]