PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027593.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 752aa    MW: 79907.6 Da    PI: 7.4389
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027593.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.14.1e-08207235129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      r++W++ Ed  l+ av++lG g+W++I r
      CCG027593.2 207 RKPWSEAEDMELIAAVHKLGEGNWASIVR 235
                      789***********************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.687202254IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.5E-9203247IPR009057Homeodomain-like
SuperFamilySSF466892.77E-8203248IPR009057Homeodomain-like
PfamPF002491.6E-6207233IPR001005SANT/Myb domain
CDDcd116604.93E-8208249No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 752 aa     Download sequence    Send to blast
MIEKSKKNKK GVISEEDVST LLQRYTATTL LALLQEVAQF DGAKIDWNAL VKKTSTGISN  60
AREYRMLWRH LAYRHVLPEK FDDGAHPLDD DDSDLESELE AFPSVTSEAS TEAAACVKVL  120
IASGLPSDSA HPNNTTVEAP LTINIPNGRS LRATSENSQS DAMQGVNIRV PVSVQKLSLP  180
AVTPCPASEV YDANGSGTGT FPPRRKRKPW SEAEDMELIA AVHKLGEGNW ASIVRGEFKG  240
DRTASQLSQL DSQALIVQSW LDRSWKWLLY IFFLPRTLRD LVVSSSFAMA HIFVGSAMRV  300
IPSDIAASAV NRGLSTNTDR WAIIRKRHGN LNVGTVSSAP QLSETQRAAR DAVKMALDPH  360
PAAKSLIASS AGTTSTKTPN NCVPPTITAE ASPAQHQSQQ RTMMTKSSSI WPVGPAAKSQ  420
VMLAKASEKS ILSSDPVRAA AVAAGARIAT QSDAASLLKA AQAKNAVHIM PTGSSSIKSS  480
MTGGISTHLD VNPNTRFISS GMATAPTTTR PAASGPCPGL PKATSPPPQM KASSSTAQHA  540
QSTPVTSFNA QYEQTNSVLA KTTVLPPQMK PSSMTTQNTQ STPITSLSTP SEQTNAESSP  600
KQGIVTIKDT KAFGSLEVAN GQVQKDGAHV SVKEPSEHVQ EVKTALTNQE AELKSQVAAL  660
ESSNGSPKLI MNENGLVNVT GNQVHGSQNA DDNKMTCSPI KEAENQSAVQ GNDENQSVSE  720
RQADLPSSVS NESCVKVDSI SRTEASDGMM DG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202208PRRKRKP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016944.10.0PREDICTED: mucin-5AC-like isoform X1
TrEMBLB9GN480.0B9GN48_POPTR; Uncharacterized protein
STRINGPOPTR_0002s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31223256
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09710.12e-56MYB_related family protein