PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027631.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 357aa    MW: 39029.2 Da    PI: 4.6148
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027631.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA48.31.4e-15210246135
         GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C +Cg+++  Tp +Rrgp g++tLCnaCGl+++ kg+
  CCG027631.1 210 CKHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 246
                  *******99*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009796.7E-770105IPR010399Tify domain
PROSITE profilePS5132012.76670105IPR010399Tify domain
PfamPF062003.6E-1073104IPR010399Tify domain
PfamPF062031.0E-14138179IPR010402CCT domain
PROSITE profilePS5101712.65138180IPR010402CCT domain
PROSITE profilePS501148.51204261IPR000679Zinc finger, GATA-type
SMARTSM004012.7E-9204257IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.32E-11205254No hitNo description
Gene3DG3DSA:3.30.50.102.1E-14208251IPR013088Zinc finger, NHR/GATA-type
CDDcd002025.09E-15209253No hitNo description
PfamPF003201.8E-13210246IPR000679Zinc finger, GATA-type
PROSITE patternPS003440210237IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 357 aa     Download sequence    Send to blast
MAAANPQPLQ ARPYKDHRTR APVQIEDDDD GEYEDGDGMD DMEEEAAVAQ VNSGVSVAEH  60
NHGAGGGVVI ASRTSELTLS FEGEVYVFPA VTPEKVQAVL LLLGGRDIPT AVPAIEVQYD  120
QNNRGVGDTP KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL  180
KENPGDSSWD SGQSCLQDGT PLSETVVRRC KHCGVSENNT PAMRRGPAGP RTLCNACGLM  240
WANKGTLRDL SKGGRNLPVN QIEPETLIEV KPSIIEGEFS GNQDEHGTAK DLSKAVSEGF  300
NNHSIDPDEV LQEATEDITN TLPMGVIHSS GDDDEQEPLV ELANPSDTEL DIPANFD
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132DTPKRS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017000.10.0PREDICTED: GATA transcription factor 24-like isoform X1
RefseqXP_011017001.10.0PREDICTED: GATA transcription factor 24-like isoform X1
SwissprotQ8H1G07e-71GAT28_ARATH; GATA transcription factor 28
TrEMBLB9GN850.0B9GN85_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33193364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G21175.24e-74ZIM-like 1