PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027632.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GATA

Protein Properties

Length: 290aa MW: 31549.9 Da PI: 6.0741

Description

GATA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027632.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GATA	53.1	4.3e-17	201	237	1	35
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cgt + Tp++Rrgp+g+++LCnaCGl+++ +g+ CCG027632.1 201 CTHCGTNSksTPMMRRGPSGPRSLCNACGLFWANRGT 237 *****99**********************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00979	4.1E-11	69	104	IPR010399	Tify domain
PROSITE profile	PS51320	14.883	69	104	IPR010399	Tify domain
Pfam	PF06200	4.3E-12	73	103	IPR010399	Tify domain
Pfam	PF06203	1.1E-15	133	175	IPR010402	CCT domain
PROSITE profile	PS51017	12.451	133	175	IPR010402	CCT domain
PROSITE profile	PS50114	9.684	195	244	IPR000679	Zinc finger, GATA-type
SMART	SM00401	3.6E-14	195	248	IPR000679	Zinc finger, GATA-type
SuperFamily	SSF57716	5.23E-12	197	245	No hit	No description
Gene3D	G3DSA:3.30.50.10	3.1E-15	199	241	IPR013088	Zinc finger, NHR/GATA-type
CDD	cd00202	9.71E-16	200	244	No hit	No description
PROSITE pattern	PS00344	0	201	228	IPR000679	Zinc finger, GATA-type
Pfam	PF00320	9.6E-15	201	237	IPR000679	Zinc finger, GATA-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0007623	Biological Process	circadian rhythm
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0005515	Molecular Function	protein binding
GO:0008270	Molecular Function	zinc ion binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MYTPSQPMNV HNQIVSTGVD DDGAPADPID HHHHIHYEDG TPAVVVEDVS PDSVYVAAGV 60 AASELGIQPS DCSSQLTLTF RGQVYVFDSV TPDKVQAVLL LLGGSELTPG LEMTTQNQRG 120 VVEYPPRCTQ PQRAASLSRF RQKRKERCFD KKVRYGVRQE VALRMQRNKG QFTSAKKSEG 180 GYGWDAGQDS AQDDSQHETS CTHCGTNSKS TPMMRRGPSG PRSLCNACGL FWANRGTLRD 240 HSKKALEHSV APIDLGETEA NESDSVPAID THDNPVTYAN GGDTALITDH

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269\|PubMed:14966217}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00451	DAP	Transfer from AT4G24470	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	GU277145	1e-138	GU277145.1 Populus balsamifera isolate HAY07 haplotype B GATA type zinc finger protein ZIM gene, partial sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017003.1	0.0	PREDICTED: GATA transcription factor 25
Swissprot	Q9LRH6	1e-90	GAT25_ARATH; GATA transcription factor 25
TrEMBL	A0A3Q9EET8	0.0	A0A3Q9EET8_POPTO; GATA-type zinc finger protein with TIFY domain
STRING	POPTR_0002s11150.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2836	33	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24470.2	3e-86	GATA-type zinc finger protein with TIFY domain

Publications ? help Back to Top
Brand LH, et al. Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA. PLoS ONE, 2013. 8(10): p. e75177 [PMID:24146751]