PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG027667.2
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 643aa    MW: 70822.2 Da    PI: 6.5999
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG027667.2genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2392e-12324380155
          AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                  s+y+GV++++++gr++A+++d  ++  g  rk  + g ++ +e+Aa+a++ a++k++g
  CCG027667.2 324 SQYRGVTRHRWTGRYEAHLWDnSCKkEGqTRKGRQ-GGYDMEEKAARAYDLAALKYWG 380
                  78*******************77776664346655.77******************98 PP
2AP235.32.9e-11412457755
          AP2   7 rwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                  r++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  CCG027667.2 412 RRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 457
                  8999********988532...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-9324380IPR001471AP2/ERF domain
CDDcd000184.94E-19324388No hitNo description
SuperFamilySSF541712.16E-14324390IPR016177DNA-binding domain
SMARTSM003801.1E-22325394IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-12325389IPR001471AP2/ERF domain
PROSITE profilePS5103217.359325388IPR001471AP2/ERF domain
PRINTSPR003678.2E-6326337IPR001471AP2/ERF domain
PROSITE profilePS5103216.423406465IPR001471AP2/ERF domain
PfamPF008473.7E-6412457IPR001471AP2/ERF domain
CDDcd000186.78E-21412467No hitNo description
SMARTSM003801.4E-26412471IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-14413466IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.5E-15413465IPR001471AP2/ERF domain
PRINTSPR003678.2E-6447467IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MKSTGDNNNG SNNNWLGFSL SPHMKMEVAS DPQHHHQYHH QNHAPTSVSV SAAVPTSFYL  60
STTHFSNPGI SYGVGENDGF HSPLSVMPLK SDGSLCIMEA LTRSQPEGMV SSPSPKLEDF  120
LGGATMESHQ YGSHESEAMA LSLDSLYYHQ NSESETNRQH SLDLHEPFRQ QDQQFSVQPH  180
PYYSGIAFQG LYQASLEGET KGSQLADCNS PIPQMGDDEL PCLKNWVARH YSSQSALEQQ  240
INSSMVNDGG SSCSVSAMGC GDLQSLSLSM SPGSQSSCIT IPRQMSPTGA ECAAIETKKR  300
GPAKVGQKQP VHRKSIDTFG QRTSQYRGVT RHRWTGRYEA HLWDNSCKKE GQTRKGRQGG  360
YDMEEKAARA YDLAALKYWG PSTHINFPLE NYQEELEELK NMSRQEYVAH LRRHHQHGRW  420
QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGVNA VTNFNITRYD VDRIMASNTL  480
LAGELARRNR DTESSIEAND YNSSTHDNGV LYQSSQEQPN ACGESLDQKS MSSGNYRSSS  540
FSVALQDLIG IDHSANSSQL VVDEAAKRGT LLSNPSSLVT SLSSSREPSP DKTATTMLFA  600
KPPLASKFVS PTTSVTPWFQ AAQLRPAAIP MSHLPVFAAW NDT
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHM8536700.0HM853670.1 Populus tremula x Populus alba aintegumenta (ANT) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011017079.10.0PREDICTED: AP2-like ethylene-responsive transcription factor ANT
SwissprotQ389141e-138ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT
TrEMBLA0A2K2BHD30.0A0A2K2BHD3_POPTR; Uncharacterized protein
STRINGPOPTR_0002s11550.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF91634114
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37750.11e-132AP2 family protein
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Horstman A,Willemsen V,Boutilier K,Heidstra R
    AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks.
    Trends Plant Sci., 2014. 19(3): p. 146-57
    [PMID:24280109]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Wynn AN,Seaman AA,Jones AL,Franks RG
    Novel functional roles for PERIANTHIA and SEUSS during floral organ identity specification, floral meristem termination, and gynoecial development.
    Front Plant Sci, 2014. 5: p. 130
    [PMID:24778638]
  5. Randall RS, et al.
    AINTEGUMENTA and the D-type cyclin CYCD3;1 regulate root secondary growth and respond to cytokinins.
    Biol Open, 2015. 4(10): p. 1229-36
    [PMID:26340943]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Yamaguchi N,Jeong CW,Nole-Wilson S,Krizek BA,Wagner D
    AINTEGUMENTA and AINTEGUMENTA-LIKE6/PLETHORA3 Induce LEAFY Expression in Response to Auxin to Promote the Onset of Flower Formation in Arabidopsis.
    Plant Physiol., 2016. 170(1): p. 283-93
    [PMID:26537561]
  8. Krizek BA, et al.
    RNA-Seq Links the Transcription Factors AINTEGUMENTA and AINTEGUMENTA-LIKE6 to Cell Wall Remodeling and Plant Defense Pathways.
    Plant Physiol., 2016. 171(3): p. 2069-84
    [PMID:27208279]
  9. Han H,Krizek BA
    AINTEGUMENTA-LIKE6 can functionally replace AINTEGUMENTA but alters Arabidopsis flower development when misexpressed at high levels.
    Plant Mol. Biol., 2016. 92(4-5): p. 597-612
    [PMID:27605095]
  10. Karpinska B,Alomrani SO,Foyer CH
    Inhibitor-induced oxidation of the nucleus and cytosol in Arabidopsis thaliana: implications for organelle to nucleus retrograde signalling.
    Philos. Trans. R. Soc. Lond., B, Biol. Sci., 2018.
    [PMID:28808105]
  11. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]