PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027703.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 208aa MW: 22627.7 Da PI: 8.5996

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027703.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95	8.1e-30	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C++ Cvl+ ++ p++q +++ +++k+FG+s +++l++a+pe +r+++++sl++eA+ r+ +Pv+G+vg++++++++++q+++e CCG027703.1 2 SCNGCRVLRKGCSETCVLRSCLhwitnPEAQGNATLFLAKFFGRSDLMSLISAVPEVQRPALFQSLLFEACGRTVNPVNGVVGLLWSGNWHVCQEAVE 99 6***********************************************************************************************99 PP DUF260 94 lall 97 ++l CCG027703.1 100 TVLS 103 8875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.899	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.6E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 208 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SCLHWITNPE AQGNATLFLA KFFGRSDLMS LISAVPEVQR 60 PALFQSLLFE ACGRTVNPVN GVVGLLWSGN WHVCQEAVET VLSGGALRPL PGTLTGVLAP 120 NCDESSDRFS AAADAVHNMA RNQSRSFAKE KNNEVVSDHH VNLRLARGKG GRDKRGRDAV 180 SFYTRGESET ISFESSGGDK KRLLNLFV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017127.1	1e-152	PREDICTED: LOB domain-containing protein 39-like
Swissprot	Q9SZE8	6e-65	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	A0A1L6K5D3	1e-144	A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like
STRING	POPTR_0002s12020.1	1e-143	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37540.1	7e-67	LOB domain-containing protein 39