PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG027748.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WOX

Protein Properties

Length: 213aa MW: 24587.6 Da PI: 9.7115

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG027748.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	64.6	1.3e-20	78	137	3	57
--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 +R+++t+eq+ +Le l++ r+p+ +++e+++++l +++ ++V++WFqN++a+e++ CCG027748.1 78 TRWNPTQEQIGVLEMLYRGgMRTPNGQQIEDITAQLsrygKIEGKNVFYWFQNHKARERQ 137 7***************99************************************97 PP
2	Wus_type_Homeobox	116.4	1.3e-37	78	139	4	65
Wus_type_Homeobox 4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 tRW+Pt+eQi +Le+ly+ G+rtPn ++i++ita+L++yGkie+kNVfyWFQN+kaRerqkq CCG027748.1 78 TRWNPTQEQIGVLEMLYRGGMRTPNGQQIEDITAQLSRYGKIEGKNVFYWFQNHKARERQKQ 139 8***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.896	73	138	IPR001356	Homeobox domain
SuperFamily	SSF46689	2.01E-11	75	144	IPR009057	Homeodomain-like
SMART	SM00389	4.4E-6	75	142	IPR001356	Homeobox domain
Pfam	PF00046	2.3E-18	78	137	IPR001356	Homeobox domain
CDD	cd00086	4.66E-4	78	139	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.3E-7	79	137	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 213 aa Download sequence Send to blast
MGNMKVHQLA RGFWEHEPFL TLGFKRLRPL APKLANTDHS AASFDLKSFI RPESGPRNLA 60 SSDEKKDSHQ GETHPGGTRW NPTQEQIGVL EMLYRGGMRT PNGQQIEDIT AQLSRYGKIE 120 GKNVFYWFQN HKARERQKQK RNSLGLSHSP RTPSPVTIIS LDTRGEVERE EDSPYKRKCR 180 SWTFECLELE DSRSCREKGD RTLELFPLHP EGR

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KF982703	0.0	KF982703.1 Populus tomentosa WOX4a (WOX4a) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011017175.1	1e-159	PREDICTED: WUSCHEL-related homeobox 4-like
Swissprot	Q6X7J9	1e-70	WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBL	B9GNU3	1e-153	B9GNU3_POPTR; WOX family protein
STRING	POPTR_0002s12560.1	1e-154	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6132	34	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46480.1	4e-73	WUSCHEL related homeobox 4

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Dolzblasz A, et al. Stem Cell Regulation by Arabidopsis WOX Genes. Mol Plant, 2016. 9(7): p. 1028-39 [PMID:27109605] Guo X, et al. Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation. PLoS Pathog., 2017. 13(2): p. e1006142 [PMID:28158306] Denis E, et al. WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis. Plant J., 2017. 90(3): p. 560-572 [PMID:28218997] Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees. New Phytol., 2017. 215(2): p. 642-657 [PMID:28609015] Yamaguchi YL, et al. Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots. Front Plant Sci, 2017. 8: p. 1195 [PMID:28747918]