PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028066.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TALE

Protein Properties

Length: 817aa MW: 88444.8 Da PI: 7.1431

Description

TALE family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028066.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	28.3	2.9e-09	576	613	19	54
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps +++ LA+++gL+ +qV++WF N R + CCG028066.1 576 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 613 664459******************************88 PP
2	BELL	93.2	2.4e-30	452	507	17	72
BELL 17 eeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 ++VdkrY++y+eq+q+v++sF+ ++g g+a pYt+lA+ka+SrhFrcLk+ai+ q+ CCG028066.1 452 KKVDKRYNHYCEQMQMVVNSFDLIMGFGAAVPYTALAQKAMSRHFRCLKEAISAQL 507 58***************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00574	7.2E-67	377	505	IPR006563	POX domain
Pfam	PF07526	2.9E-40	382	504	IPR006563	POX domain
PROSITE profile	PS50071	12.568	554	617	IPR001356	Homeobox domain
SMART	SM00389	1.2E-9	557	621	IPR001356	Homeobox domain
CDD	cd00086	3.83E-13	557	618	No hit	No description
SuperFamily	SSF46689	3.94E-17	559	624	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	1.0E-28	560	623	IPR009057	Homeodomain-like
Pfam	PF05920	4.2E-18	574	613	IPR008422	Homeobox KN domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MGIATPPFPP ILPHSKTHQL ISPNIKSNPS NQNSMSQDYH QGIFSFSHGG FDRSSVSLQE 60 HNQQQQQQQQ QHDIAQQIRR DKLRIQSDYE PPPPALVGIE EEEEQSSGLP VYETAGMLSE 120 MFNFPPAGGP AAAVDLLDQP VHSNYRTQPR QQQPVTTNDW YNSNNRQSMV VEGLGIGDSK 180 SNSNRDSLAQ HQHQISGINA DSAAAMQLFL MNPSQPRSPQ SPSPSHHQTP PSTSSTLHML 240 LPNPSSSLQG YIAVPGGGFG ATSVISPPQF TWVPDSSHEG GNTGGPLNNP SEISGVVEGQ 300 GLSLSLSSSL QHLEAAKAEE LRMGSGGLLY YNQGAGGSSS AQYYKNLGGH QHHQALHLQG 360 GVGQNHHQVH VGFGSSLGVV NVLRNSKYVR PAQELLEEFC SVGRGQLKKS KFGRQNTNPS 420 SNNNPGGGGG SSSSTKDPLP LSAADRIEHQ RKKVDKRYNH YCEQMQMVVN SFDLIMGFGA 480 AVPYTALAQK AMSRHFRCLK EAISAQLKHS CELLGDKDGA GTSAITKGET PRLKLLEQSL 540 RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR 600 NQVSNWFINA RVRLWKPMVE EMYQQEAKEE EPGAEDRERK PTSSNSNNNN SGLAQTPTPT 660 TTTTGSSAPA ATTTAPTATT IPSGKRSEIN ANEKDPSLLA INRQCFSENQ AKLSTSSSTP 720 IITPTNITST TEVAPQPHAG QSFHHFADDT CPQGSIVIAD YGTTSGNANA EADHNGSTLI 780 RFGTSAAGDV SLTLGLRHAG NVPDKSPSFS VRDFGGC

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MGIATPPFPP ILPHSKTHQL ISPNIKSNPS NQNSMSQDYH QGIFSFSHGG FDRSSVSLQE  60
HNQQQQQQQQ QHDIAQQIRR DKLRIQSDYE PPPPALVGIE EEEEQSSGLP VYETAGMLSE  120
MFNFPPAGGP AAAVDLLDQP VHSNYRTQPR QQQPVTTNDW YNSNNRQSMV VEGLGIGDSK  180
SNSNRDSLAQ HQHQISGINA DSAAAMQLFL MNPSQPRSPQ SPSPSHHQTP PSTSSTLHML  240
LPNPSSSLQG YIAVPGGGFG ATSVISPPQF TWVPDSSHEG GNTGGPLNNP SEISGVVEGQ  300
GLSLSLSSSL QHLEAAKAEE LRMGSGGLLY YNQGAGGSSS AQYYKNLGGH QHHQALHLQG  360
GVGQNHHQVH VGFGSSLGVV NVLRNSKYVR PAQELLEEFC SVGRGQLKKS KFGRQNTNPS  420
SNNNPGGGGG SSSSTKDPLP LSAADRIEHQ RKKVDKRYNH YCEQMQMVVN SFDLIMGFGA  480
AVPYTALAQK AMSRHFRCLK EAISAQLKHS CELLGDKDGA GTSAITKGET PRLKLLEQSL  540
RQQRAFHQMG MMEQEAWRPQ RGLPERSVNI LRAWLFEHFL HPYPSDADKH LLARQTGLSR  600
NQVSNWFINA RVRLWKPMVE EMYQQEAKEE EPGAEDRERK PTSSNSNNNN SGLAQTPTPT  660
TTTTGSSAPA ATTTAPTATT IPSGKRSEIN ANEKDPSLLA INRQCFSENQ AKLSTSSSTP  720
IITPTNITST TEVAPQPHAG QSFHHFADDT CPQGSIVIAD YGTTSGNANA EADHNGSTLI  780
RFGTSAAGDV SLTLGLRHAG NVPDKSPSFS VRDFGGC

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3k2a_A	2e-16	563	621	5	63	Homeobox protein Meis2
3k2a_B	2e-16	563	621	5	63	Homeobox protein Meis2
4xrm_A	3e-16	563	621	5	63	Homeobox protein Meis2
4xrm_B	3e-16	563	621	5	63	Homeobox protein Meis2
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011009913.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Refseq	XP_011009914.1	0.0	PREDICTED: BEL1-like homeodomain protein 4
Swissprot	Q9SW80	1e-175	BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBL	B9H697	0.0	B9H697_POPTR; Uncharacterized protein
STRING	POPTR_0005s13780.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3524	32	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36870.2	1e-140	BEL1-like homeodomain 2

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]