PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028092.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 715aa    MW: 78383.3 Da    PI: 6.8165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028092.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.42e-30255312260
                  --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                  +DgynWrKYGqK+vkgse+prsYY+C +a+C vkkk+e+++ +++++ei+Y+g+Hnh+k
  CCG028092.1 255 EDGYNWRKYGQKQVKGSEYPRSYYKCNHANCLVKKKIECAH-EGQITEIIYKGTHNHPK 312
                  7***************************************9.***************85 PP
2WRKY1053.9e-33456514159
                  ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
         WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                  ldDgy+WrKYGqK+vkg+++prsYY+CtsagC+v+k+ver+++d k+v+itYeg+Hnhe
  CCG028092.1 456 LDDGYRWRKYGQKVVKGNPNPRSYYKCTSAGCSVRKHVERASHDLKYVIITYEGKHNHE 514
                  59********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.2E-26242313IPR003657WRKY domain
SMARTSM007741.9E-32254312IPR003657WRKY domain
SuperFamilySSF1182901.06E-23254313IPR003657WRKY domain
PfamPF031062.1E-23255311IPR003657WRKY domain
PROSITE profilePS5081121.677255313IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.6E-36441516IPR003657WRKY domain
SuperFamilySSF1182902.09E-28449516IPR003657WRKY domain
PROSITE profilePS5081137.815451516IPR003657WRKY domain
SMARTSM007741.3E-37456515IPR003657WRKY domain
PfamPF031063.1E-25457514IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 715 aa     Download sequence    Send to blast
MENNPAAEHK TLLWVPNLET KSSNGGVGGD NNRGISIAER RAAKCGFKMK AERINTARFR  60
TTSPLTSPLR SPFITIPSGI SPTVLLDSPI MLSNSHVQPS PTTGTFPLSP LKYESESLLL  120
CGDGERGSNA GGLSFRFRFK PLGNSLPLSE NQGNDFDFEA TLLMDPSMDF QLPVEFSKQV  180
TPDKCTSDSH TDVNVLDSVI GNANVSDMQI CPSDLASNPI YVQRETIHGE NVVSCRLMEE  240
NKRTVPATTI GRSSEDGYNW RKYGQKQVKG SEYPRSYYKC NHANCLVKKK IECAHEGQIT  300
EIIYKGTHNH PKPQPSCGAP PGPASSLDEM PEMDEGESVQ KKTKSGFKDI KVQSDWRTDG  360
LQRTSSTSAV TELSSTSQIK SLETYESTIT PELSSTLASH DDDGVTQGSS FGAEADDESE  420
SKRRKIESCL VETNMASRAI REPRVIVQIE SEVDILDDGY RWRKYGQKVV KGNPNPRSYY  480
KCTSAGCSVR KHVERASHDL KYVIITYEGK HNHEVPAARN SSHGNSTSSN FSQAAGNAQL  540
ALALARNTNA PNPEAQIQEF APSFDRKPVF NNDYLRSNFP GNFSSEMNLG SSFVYPMRFP  600
PIQNAMPCDS FGFSNQQLAA SHSGSTASLV PDFPRSLSPC LQTAANLSLA RVDFSCDGKP  660
VGQVQTFLQG QQSIRPKQEQ KDDNLYGASS SIMDNLKAPS SSLSVYHQLL GNFQS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-32255517878Probable WRKY transcription factor 4
2lex_A3e-32255517878Probable WRKY transcription factor 4
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJN1179310.0JN117931.1 (Populus tomentosa x P. bolleana) x P. tomentosa WRKY transcription factor (WRKY35) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011009958.10.0PREDICTED: probable WRKY transcription factor 20
TrEMBLA0A2K1Y3350.0A0A2K1Y335_POPTR; Uncharacterized protein
STRINGPOPTR_0013s08380.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF83493445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56270.12e-92WRKY DNA-binding protein 2