PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028232.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 105aa    MW: 11652.3 Da    PI: 9.252
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028232.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B330.75.5e-104103198
                  EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                  f k+ltp d  +   lvlp +   +     +g  e     ++e+  g       ++ +  +  sg++v+++GW + +++ gL++gD+v+F+ + +  +
  CCG028232.1   4 FTKQLTPIDFERG--LVLPPSSNLAPlqhfQGAIEL--STIVESAAGtrlpDPVTIHC--STISGSFVFRRGWYDIARDVGLRSGDTVTFYQEVNGAA 95 
                  6677766555543..777777633224545333233..35667777744444444444..88999**************************6655666 PP

                  ..EEEEE- CS
           B3  91 elvvkvfr 98 
                  ++++kv++
  CCG028232.1  96 RFKLKVRN 103
                  66776665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.51E-9399IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.6E-10394IPR015300DNA-binding pseudobarrel domain
CDDcd100173.98E-83103No hitNo description
PfamPF023622.2E-74102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 105 aa     Download sequence    Send to blast
MEIFTKQLTP IDFERGLVLP PSSNLAPLQH FQGAIELSTI VESAAGTRLP DPVTIHCSTI  60
SGSFVFRRGW YDIARDVGLR SGDTVTFYQE VNGAARFKLK VRNAR
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170361e-137AC217036.1 Populus trichocarpa clone POP039-B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1R9262e-61A0A2K1R926_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00200.12e-62(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1621222