PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028251.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 231aa MW: 25236.3 Da PI: 6.1228

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028251.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	91.1	1.4e-28	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C++lr++C +dC + p++ p++q++++ +++k++G++ +++l++a +++ r+++++sl+yeA+ r+ +Pv+G+vg+++++++q +q+++e CCG028251.1 4 SCNGCRILRKGCGDDCSIKPCLqwietPDSQANATLFLAKFYGRAGLMNLINAGSQHLRPATFKSLLYEACGRIVNPVSGSVGLLSTGSWQQCQAAVE 101 6************************************************************************************************* PP DUF260 94 lallkee 100 ++l +e+ CCG028251.1 102 AVLKGEP 108 9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.426	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-23	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRMSCNGCRI LRKGCGDDCS IKPCLQWIET PDSQANATLF LAKFYGRAGL MNLINAGSQH 60 LRPATFKSLL YEACGRIVNP VSGSVGLLST GSWQQCQAAV EAVLKGEPIT QTASTDQLTV 120 GASDTRHVSR EVDWCASDQP RKVKSKRQFN RSTSKRKSSR TESEHTCFEF MIGFDGSRSV 180 SPDSVLSWRP SLGSDNEETD SMGSVETVEA SKLDEPAEGT DLDLDLTLGH Y

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011005502.1	1e-172	PREDICTED: LOB domain-containing protein 40-like
Swissprot	Q9M886	8e-66	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2K1Y9E0	1e-158	A0A2K1Y9E0_POPTR; Uncharacterized protein
STRING	POPTR_0012s05340.1	1e-160	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	5e-60	LOB domain-containing protein 41