PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028260.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 832aa    MW: 91056 Da    PI: 6.4636
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028260.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.52.3e-182785357
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 k  ++t+eq+e+Le++++++++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  CCG028260.1 27 KYVRYTSEQVEALERVYAECPKPSSLRRQQLIRECpilaNIEPKQIKVWFQNRRCREKQ 85
                 5679*****************************************************97 PP
2START154.86.9e-491653722204
                  HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEEEEX CS
        START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlmvae 97 
                  laee+++e+++ka+ ++  Wv+++ +++g++++ +f+ s+ +sg a+ra+g+v  +++  ++e+l+d++ W ++++  e+  v   g  g+++l +++
  CCG028260.1 165 LAEETLAEFLSKATGTAVDWVQMPGMKPGPDSVGIFAISQRCSGVAARACGLVSLEPT-KLAEILKDRQSWFRDCRNLEVFTVFPAGngGTIELLYSQ 261
                  7899******************************************************.6666666666**********9999999999********* PP

                  XTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHHHHHHHH CS
        START  98 lqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslvksglae 191
                   +a+++l+p Rdf+++Ry+ +l+ g++v++++S++     p+    +++vRae+lpSg+li+p+++g+s +++v+h +l++++++++lr+l++s+ a 
  CCG028260.1 262 IYAPTTLAPaRDFWTLRYTISLENGSLVVCERSLSGSGAGPNaaaAAQFVRAEMLPSGYLIRPCEGGGSIIHIVDHLNLQAWSVPEVLRPLYESSKAV 359
                  ***********************************99999998999**************************************************** PP

                  HHHHHHHHTXXXX CS
        START 192 gaktwvatlqrqc 204
                  ++k +  +l++ +
  CCG028260.1 360 AQKVTIMALRHVR 372
                  *999888887765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.609.6E-19985IPR009057Homeodomain-like
PROSITE profilePS5007115.4672286IPR001356Homeobox domain
SMARTSM003893.2E-152490IPR001356Homeobox domain
SuperFamilySSF466893.68E-162588IPR009057Homeodomain-like
CDDcd000863.38E-162787No hitNo description
PfamPF000465.4E-162885IPR001356Homeobox domain
CDDcd146864.41E-679118No hitNo description
PROSITE profilePS5084825.388155356IPR002913START domain
CDDcd088751.30E-70159375No hitNo description
SMARTSM002342.6E-40164374IPR002913START domain
PfamPF018522.9E-46165372IPR002913START domain
SuperFamilySSF559611.14E-31165373No hitNo description
Gene3DG3DSA:3.30.530.203.9E-18165348IPR023393START-like domain
PfamPF086708.0E-24699804IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009855Biological Processdetermination of bilateral symmetry
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0009956Biological Processradial pattern formation
GO:0010014Biological Processmeristem initiation
GO:0010051Biological Processxylem and phloem pattern formation
GO:0010089Biological Processxylem development
GO:0030154Biological Processcell differentiation
GO:0005634Cellular Componentnucleus
GO:0008289Molecular Functionlipid binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 832 aa     Download sequence    Send to blast
MAMAVAPQHR ESSSSGSLNK HLTDNGKYVR YTSEQVEALE RVYAECPKPS SLRRQQLIRE  60
CPILANIEPK QIKVWFQNRR CREKQRKESS RLQTVNRKLT AMNKLLMEEN DRLQKQVSQL  120
VCENGFMQQQ LQTAPAAADA SCDSAVTTPQ HSLRDANNPA GLLSLAEETL AEFLSKATGT  180
AVDWVQMPGM KPGPDSVGIF AISQRCSGVA ARACGLVSLE PTKLAEILKD RQSWFRDCRN  240
LEVFTVFPAG NGGTIELLYS QIYAPTTLAP ARDFWTLRYT ISLENGSLVV CERSLSGSGA  300
GPNAAAAAQF VRAEMLPSGY LIRPCEGGGS IIHIVDHLNL QAWSVPEVLR PLYESSKAVA  360
QKVTIMALRH VRQIAHETSG EVVYGLGRQP AVLRTFSQRL SRGFNDAING FNDDGWSLMN  420
SDGAEDVIIA VNTTKNLISA NNPAHSLSFL GGILCAKASM LLQNVPPAVL VRFLREHRSE  480
WADFSVDAYS AASLKAGSYA YPGMRSMRFT GSQIIMPLGH TIEQEELLEV IRLEGHSFAQ  540
EDAFVSRDIH LLQICSGIDE NAVGACSELV FAPIDEMFPD DAPLLPSGFR VIPLESKTKD  600
AQEALTTNRT LDLTSSLEVG PVTNHASVDG SSCHLRSVLT IAFQFPFESN LQDNVATMAR  660
QYVRSVISSV QRVATAISPS GLNPALGPKL SAGSPEALTL AHWICQSYWQ VLPQVSSCYH  720
LGAELLRSDS VGGDSVLKHL WHHPDAILCC SLEALPVFIF ANQAGLDMLE TTLVALQDIT  780
LDKIFDESGR KALFTDFAKL MQQASLTWKY VLFLLIACLT CVLRNVGCLP SS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of interfascicular fiber (cortical cells) and secondary xylem differentiation in the inflorescence stems. Required for lateral shoot meristems (LSMs) and flower meristems (FMs) initiation. May be involved in the determination of vascular patterning and organ polarity (PubMed:10559440, PubMed:11169198, PubMed:11402186, PubMed:15111711, PubMed:15598805, PubMed:7555701). Directly regulates the expression of AGO10, ZPR1, ZPR2, ZPR3 and ZPR4 (PubMed:22781836). Required to regulate adaxial-abaxial polarity and leaf axial patterning (PubMed:20807212). {ECO:0000269|PubMed:10559440, ECO:0000269|PubMed:11169198, ECO:0000269|PubMed:11402186, ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:20807212, ECO:0000269|PubMed:22781836, ECO:0000269|PubMed:7555701}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by ZPR and miR165. Induced by DOF5.1 (PubMed:20807212). {ECO:0000269|PubMed:15111711, ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:20807212}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY9196160.0AY919616.1 Populus trichocarpa class III HD-Zip protein 1 (HB1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010050.10.0PREDICTED: homeobox-leucine zipper protein REVOLUTA-like isoform X1
SwissprotQ9SE430.0REV_ARATH; Homeobox-leucine zipper protein REVOLUTA
TrEMBLA0A2K1Z1470.0A0A2K1Z147_POPTR; Uncharacterized protein
STRINGPOPTR_0009s01990.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66333147
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60690.10.0HD-ZIP family protein
Publications ? help Back to Top
  1. Lian H,Li X,Liu Z,He Y
    HYL1 is required for establishment of stamen architecture with four microsporangia in Arabidopsis.
    J. Exp. Bot., 2013. 64(11): p. 3397-410
    [PMID:23918970]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Shi B, et al.
    Two-Step Regulation of a Meristematic Cell Population Acting in Shoot Branching in Arabidopsis.
    PLoS Genet., 2016. 12(7): p. e1006168
    [PMID:27398935]