PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028277.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 356aa    MW: 40022.7 Da    PI: 6.7301
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028277.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding48.22.6e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+ Ed++l  ++k +G g W+  +++ g++R++k+c++rw++yl
      CCG028277.1 14 RGAWTALEDKILMAYIKAHGEGKWRNLPERAGLNRCGKSCRLRWLNYL 61
                     89********************************************97 PP
2Myb_DNA-binding50.35.4e-1667111147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg+ + +E+el+++++++lG++ W++Ia +++ gRt++++k++w++ 
      CCG028277.1  67 RGNISHDEEELIIRLHNLLGNR-WSLIAGRLP-GRTDNEIKNYWNTT 111
                      78999*****************.*********.************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.5E-23564IPR009057Homeodomain-like
PROSITE profilePS5129416.121961IPR017930Myb domain
SuperFamilySSF466895.08E-2812108IPR009057Homeodomain-like
SMARTSM007172.4E-121363IPR001005SANT/Myb domain
PfamPF002498.7E-141461IPR001005SANT/Myb domain
CDDcd001672.70E-81661No hitNo description
PROSITE profilePS5129424.65362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.7E-2365115IPR009057Homeodomain-like
SMARTSM007176.5E-1566114IPR001005SANT/Myb domain
PfamPF002493.6E-1467111IPR001005SANT/Myb domain
CDDcd001671.92E-1071112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MGRNPCCSKD GLNRGAWTAL EDKILMAYIK AHGEGKWRNL PERAGLNRCG KSCRLRWLNY  60
LRPDIKRGNI SHDEEELIIR LHNLLGNRWS LIAGRLPGRT DNEIKNYWNT TLGKKAEGKS  120
SSQSKQRFES KARAIKPSTS TQPSKPTQTT QVIRPKATRW TKVLFLLQSP PPTRTPPPPP  180
PPPEILSSTA MNDPSQASLI NHQEDGPNFH CGTEEVHAWH DGSDFFNFGK CNEIQPNDTD  240
GDTLMKSGCN RNLSRGSEYS LGLLDDHSGT EEVHAWHDGS DFFNFGKWNE IQPNDIDGDT  300
LMKSGCNRNL STGSEYSLGL FDELKFKDWA LNHCPEDNAT LDLESLALLL DSEERP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-231211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5731520.0FJ573152.1 Populus tremuloides MYB transcription factor R2R3-like protein (MYB086) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010069.11e-180PREDICTED: myb-related protein 308-like
TrEMBLA0A2K1WW121e-162A0A2K1WW12_POPTR; Uncharacterized protein
TrEMBLC5HYE71e-162C5HYE7_POPTM; MYB transcription factor R2R3-like protein (Fragment)
STRINGPOPTR_0018s05530.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16720.14e-60myb domain protein 7