PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028291.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

WRKY

Protein Properties

Length: 424aa MW: 45831.5 Da PI: 6.9145

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028291.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	98.1	5.8e-31	205	263	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY++eHnh+ CCG028291.1 205 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRNDPNMLVITYTSEHNHP 263 699**********************998**************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	2.0E-31	198	265	IPR003657	WRKY domain
PROSITE profile	PS50811	33.006	199	265	IPR003657	WRKY domain
SuperFamily	SSF118290	1.57E-26	202	265	IPR003657	WRKY domain
SMART	SM00774	1.2E-37	204	264	IPR003657	WRKY domain
Pfam	PF03106	6.3E-26	206	263	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MNLASSSIMG DSRVNAFGDP FCNMRDPLLH ELNVAASSYF SSRSSADHML CTTSVDQDHT 60 SNNFVGSNSA TAGSCSNILA HQKVFEDHEM HKSTAAAATT SCRNIFSRIQ ISPTNPTKLP 120 VSPCNSPVIA ACSSPRGFRP SAMVSSDVIN VINSKGCLID NTGSVQISSP RNLGIKRRKS 180 QAKKVVCIPA PAAANSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK 240 QVERSRNDPN MLVITYTSEH NHPWPTQRNA LAGSTRSQPT KSNAASKSST GAEAQKTANT 300 KEDQKESSND TSSPTDIIGG SSTASASVKE ESDDIEKQME MDDNEFSEGF SQSYRPSMPG 360 QSDQDFFAEL GEIDADPLDL LFTQGINGQD QKESKALDPF SIFDWSEDTS ISSGEAKRGF 420 ITRQ

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MNLASSSIMG DSRVNAFGDP FCNMRDPLLH ELNVAASSYF SSRSSADHML CTTSVDQDHT  60
SNNFVGSNSA TAGSCSNILA HQKVFEDHEM HKSTAAAATT SCRNIFSRIQ ISPTNPTKLP  120
VSPCNSPVIA ACSSPRGFRP SAMVSSDVIN VINSKGCLID NTGSVQISSP RNLGIKRRKS  180
QAKKVVCIPA PAAANSRSSG EVVPSDLWAW RKYGQKPIKG SPYPRGYYRC SSSKGCSARK  240
QVERSRNDPN MLVITYTSEH NHPWPTQRNA LAGSTRSQPT KSNAASKSST GAEAQKTANT  300
KEDQKESSND TSSPTDIIGG SSTASASVKE ESDDIEKQME MDDNEFSEGF SQSYRPSMPG  360
QSDQDFFAEL GEIDADPLDL LFTQGINGQD QKESKALDPF SIFDWSEDTS ISSGEAKRGF  420
ITRQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5w3x_B	3e-25	179	266	2	80	Disease resistance protein RRS1
5w3x_D	3e-25	179	266	2	80	Disease resistance protein RRS1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00171	DAP	Transfer from AT1G30650	Download

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ513218	0.0	DQ513218.1 Populus trichocarpa clone 196822 TIR-NBS-TIR-TIR-WRKY type disease resistance protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011040526.1	0.0	PREDICTED: probable WRKY transcription factor 14
Swissprot	Q9SA80	5e-95	WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBL	B9I0X2	0.0	B9I0X2_POPTR; Uncharacterized protein
STRING	POPTR_0011s16050.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5430	34	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G30650.1	9e-94	WRKY DNA-binding protein 14

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]