PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028420.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

TCP

Protein Properties

Length: 400aa MW: 45949.4 Da PI: 7.4709

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028420.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	126	4.1e-39	127	281	3	135
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.............ssssasec.....eaesssssa 82 kkdrhski T++g+RdRR+Rls+++a++fFdLqd+L fdk+skt+eWLl+qa ++ik+l + s+ss sec + CCG028420.1 127 SKKDRHSKINTAQGPRDRRMRLSLKVAREFFDLQDKLRFDKASKTVEWLLTQARTEIKKLSSGfpvmnyscsvgtkSASSTSECevlseI-----HID 219 69***********************************************************999999999977655555667444331.....333 PP TCP 83 snsssg...........kaaksaakskksqksaasalnlakesrakarararertrekmriknk 135 s+ + + k+++ + ++s+ +a + +akesr++ar+rarert+ek r +++ CCG028420.1 220 STLKVRsvskgksslcvKKERRTSRASSSR--KAPLNPFAKESRERARERARERTKEKLRSRSR 281 322221444455556554444443333333..444489999***************998865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	8.3E-42	127	277	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	33.281	128	186	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.733	258	275	IPR017888	CYC/TB1, R domain

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MFPLSNNGND PMSYNDQQAY SMPFFSDIIS NSKQYVPPPL SFCHLPSPFF AYDQLELEDH 60 SIFLQQNYDL LLHQQPLRTA ATSTTPSQST VVNNMVDYNK NDVIEITEIC NKQSNSSNDQ 120 IPRKRSSKKD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLRFDKASK TVEWLLTQAR 180 TEIKKLSSGF PVMNYSCSVG TKSASSTSEC EVLSEIHIDS TLKVRSVSKG KSSLCVKKER 240 RTSRASSSRK APLNPFAKES RERARERARE RTKEKLRSRS RSLNESKLCE LEAVNDEFNQ 300 FAGCWSPFET DDQESGTRNI NPSLEVQMAE AEVPFYQEQE QLDTREGMID ETLANMGKWS 360 PSLPTHLHKN GIPQENQFTD FQYPLYKTWD HEAYNIDGMC

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MFPLSNNGND PMSYNDQQAY SMPFFSDIIS NSKQYVPPPL SFCHLPSPFF AYDQLELEDH  60
SIFLQQNYDL LLHQQPLRTA ATSTTPSQST VVNNMVDYNK NDVIEITEIC NKQSNSSNDQ  120
IPRKRSSKKD RHSKINTAQG PRDRRMRLSL KVAREFFDLQ DKLRFDKASK TVEWLLTQAR  180
TEIKKLSSGF PVMNYSCSVG TKSASSTSEC EVLSEIHIDS TLKVRSVSKG KSSLCVKKER  240
RTSRASSSRK APLNPFAKES RERARERARE RTKEKLRSRS RSLNESKLCE LEAVNDEFNQ  300
FAGCWSPFET DDQESGTRNI NPSLEVQMAE AEVPFYQEQE QLDTREGMID ETLANMGKWS  360
PSLPTHLHKN GIPQENQFTD FQYPLYKTWD HEAYNIDGMC

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	260	272	RERARERARERTK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010148.1	0.0	PREDICTED: transcription factor TCP12-like
TrEMBL	B9IDZ9	0.0	B9IDZ9_POPTR; Uncharacterized protein
STRING	POPTR_0015s03140.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6564	28	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	2e-20	TCP domain protein 12