PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028500.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GATA
Protein Properties Length: 294aa    MW: 32549.3 Da    PI: 7.4181
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028500.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.85.6e-17223257135
         GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                  C++C +  Tp+WR gp g+ktLCnaCG++y++ +l
  CCG028500.1 223 CTHCLAQRTPQWRAGPMGPKTLCNACGVRYKSGRL 257
                  *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011411.662217253IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-15217271IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.9E-15218281No hitNo description
Gene3DG3DSA:3.30.50.107.0E-14221255IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.46E-11222269No hitNo description
PfamPF003201.0E-14223257IPR000679Zinc finger, GATA-type
PROSITE patternPS003440223248IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MDFFRNVRVS GEYHHQQEHV LASPPPCSKL TAAAASNSPL DDLFAAQNTE VDFSMEWLSV  60
FVEDCLSSTG NCLPAPKSDA QKTNTEENPP KPLQQKPQDQ ENPSSLKKLA IPGKARSKRR  120
RTTGDRSRNP ITSWCYTNQT FNLACPDPPL LQQTHWLADS ELITPIKDGS DNRGMDGEVQ  180
EKSGVEGDVE EDQGKVVEVG SSSSKDSIGS LESDNGQQQP RRCTHCLAQR TPQWRAGPMG  240
PKTLCNACGV RYKSGRLLPE YRPAKSPTFV SYLHSNSHKK VMEMRMANSA IFNT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010123.10.0PREDICTED: GATA transcription factor 12-like
TrEMBLA0A2K1WNU60.0A0A2K1WNU6_POPTR; Uncharacterized protein
STRINGPOPTR_0019s04860.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84872444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.12e-35GATA transcription factor 12