PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028530.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HD-ZIP
Protein Properties Length: 170aa    MW: 19701.3 Da    PI: 8.4686
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028530.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox55.21.2e-172073356
                 --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 k+ ++t++q++ Le+ F  n+++  e + +LA++lg++ rq+ +W+qN+Ra++k
  CCG028530.1 20 KKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWK 73
                 56779************************************************9 PP
2HD-ZIP_I/II1086.7e-3519110192
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                  +kk+rl+++qv+lLE++F++++kLepe Kv+la++Lg+ prq+a+W+qn+RAR+kt+ lE dy++L+ ++++  ++++rLe+ev +L+eel 
  CCG028530.1  19 NKKKRLTEDQVRLLERTFTTNKKLEPELKVQLANQLGVPPRQIAIWYQNKRARWKTQSLELDYNTLQVRLENALADRRRLEREVVRLQEELW 110
                  59**************************************************************************************9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.8561575IPR001356Homeobox domain
SMARTSM003898.4E-151779IPR001356Homeobox domain
SuperFamilySSF466892.27E-171884IPR009057Homeodomain-like
PfamPF000465.0E-152073IPR001356Homeobox domain
CDDcd000862.29E-142076No hitNo description
Gene3DG3DSA:1.10.10.603.1E-182182IPR009057Homeodomain-like
PROSITE patternPS0002705073IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MDFFHSQTQQ KQQYLPKHNK KKRLTEDQVR LLERTFTTNK KLEPELKVQL ANQLGVPPRQ  60
IAIWYQNKRA RWKTQSLELD YNTLQVRLEN ALADRRRLER EVVRLQEELW QAQQMVFSVN  120
QETAAQPAVN LSCNSSCDDR GSSSLHEGVN GEVLQLEELY ACLYGAGGGV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469370.0EF146937.1 Populus trichocarpa clone WS01225_C08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008450.11e-124PREDICTED: homeobox-leucine zipper protein ATHB-52-like
SwissprotQ9FN291e-42ATB52_ARATH; Homeobox-leucine zipper protein ATHB-52
TrEMBLA0A2K2CAW71e-109A0A2K2CAW7_POPTR; Uncharacterized protein
STRINGPOPTR_0001s40540.11e-110(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110112239
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G53980.12e-34homeobox protein 52