PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028547.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

LBD

Protein Properties

Length: 248aa MW: 26928.5 Da PI: 6.8552

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028547.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	100.8	1.3e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe++r+ +++sl++eA+ r+ +Pv+Gavg++++++++++q+++e CCG028547.1 2 SCNGCRVLRKGCSENCILRPCLqriesPEAQGHATVFVAKFFGRAGLMSFISSVPENQRPSLFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQAAVE 99 6**********************9999*****************************************************************99 PP DUF260 94 lall 97 ++l+ CCG028547.1 100 TVLR 103 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.826	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.5E-27	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 248 aa Download sequence Send to blast
MSCNGCRVLR KGCSENCILR PCLQRIESPE AQGHATVFVA KFFGRAGLMS FISSVPENQR 60 PSLFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPM PDLLTGGESP 120 SSSPPSDEAS EFEVACTDIW KLQDPNPNPN PNPNPIHHSR FSNSRSRVAL KRKRTEEPMV 180 VNMRPNDLDL LLTPCTSQKG FAEVCRPGTP SMNSEESVTT NATCFDSAGF GDQFGNGGGE 240 TKLLNLFL

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF148830	0.0	EF148830.1 Populus trichocarpa x Populus deltoides clone WS0138_O01 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011010183.1	0.0	PREDICTED: LOB domain-containing protein 37-like
Swissprot	Q9SZE8	7e-86	LBD39_ARATH; LOB domain-containing protein 39
TrEMBL	B9H6M3	1e-157	B9H6M3_POPTR; Uncharacterized protein
STRING	POPTR_0005s18900.1	1e-158	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	2e-82	LOB domain-containing protein 38