PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG028612.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

ZF-HD

Protein Properties

Length: 222aa MW: 24703.4 Da PI: 9.7053

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG028612.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	90.7	1.4e-28	19	73	4	59
ZF-HD_dimer 4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++Y+eC +NhA +Gg avDGCgEf+p+ g++gt++al C ACgCHRnFHR++ ++ CCG028612.1 19 IEYRECWRNHAMLTGGSAVDGCGEFTPK-GDQGTKEALICEACGCHRNFHRKQLTK 73 68***********************9.9999*****************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04770	3.5E-27	19	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	3.0E-15	19	85	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	6.0E-25	20	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	24.044	21	70	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamily	SSF48695	7.85E-5	56	126	IPR011031	Multihaem cytochrome

Sequence ? help Back to Top
Protein Sequence Length: 222 aa Download sequence Send to blast
MANADSKSGP LNEESRTIIE YRECWRNHAM LTGGSAVDGC GEFTPKGDQG TKEALICEAC 60 GCHRNFHRKQ LTKNGIIILD THLSPPPCSG CHRNFHRKQL TKNGIIILDT HLSPPPCSGC 120 HRNFHRKQLT KNGIIILDTH LSPPPCRLYG ASMWVEKNAS GFHPLSSLPL TSPSPPCYPR 180 TSVSDQESLV YVPSPSPYLR KSEKKMKARK GPKRGTLMHE RK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024439335.1	7e-83	zinc-finger homeodomain protein 3-like
TrEMBL	A0A3N7FVC8	2e-81	A0A3N7FVC8_POPTR; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17111	6	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02540.1	5e-21	homeobox protein 21