PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028632.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 1070aa    MW: 119426 Da    PI: 4.9232
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028632.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.91.1e-13853248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     g W   Ede+l+ av ++G+++W++I++ +  ++++kqck rw+ +l
      CCG028632.1  8 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 53
                     78*****************************.************986 PP
2Myb_DNA-binding32.71.8e-1060103248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        WT eEde+l+++ k++++  W+tIa  +g  Rt+ qc +r+ k+l
      CCG028632.1  60 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 103
                      68*****************99.********8..**********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.008257IPR017930Myb domain
Gene3DG3DSA:1.10.10.608.4E-18556IPR009057Homeodomain-like
SMARTSM007177.0E-15655IPR001005SANT/Myb domain
PfamPF139215.0E-131070No hitNo description
CDDcd001672.07E-121053No hitNo description
SuperFamilySSF466899.35E-2133106IPR009057Homeodomain-like
CDDcd116595.60E-3155106No hitNo description
Gene3DG3DSA:1.10.10.603.5E-1457104IPR009057Homeodomain-like
PROSITE profilePS5129416.44358107IPR017930Myb domain
SMARTSM007171.7E-1258105IPR001005SANT/Myb domain
PfamPF118317.3E-59407656IPR021786Pre-mRNA splicing factor component Cdc5p/Cef1
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009870Biological Processdefense response signaling pathway, resistance gene-dependent
GO:0010204Biological Processdefense response signaling pathway, resistance gene-independent
GO:0042742Biological Processdefense response to bacterium
GO:0050832Biological Processdefense response to fungus
GO:0009507Cellular Componentchloroplast
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1070 aa     Download sequence    Send to blast
MRIMIKGGVW KNTEDEILKA AVMKYGKNQW ARISSLLVRK SAKQCKARWY EWLDPSIKKT  60
EWTREEDEKL LHLAKLMPTQ WRTIAPIVGR TPSQCLERYE KLLDAACVKD DNYDPGDDPR  120
KLRPGEIDPN PESKPARPDP VDMDEDEKEM LSEARARLAN TKGKKAKRKA REKQLEEARR  180
LASLQKRREL KAAGIDNRQR RRKRKGIDYN SEIPFEKRPP PGFYDVADED RPVEQPKFPT  240
TIEEIEGKKR MDIEAQLRKQ DAAKNKIAER QDAPSAILQA NKLNDPETVR KRSKLMLPAP  300
QISDHELEDI AKMGYASDLL AGSDELMEGS GATRALLANY AQTPRQGMTP LRTPQRTPAG  360
KGDAIMMEAE NLARLRESQT PLLGGENPDL HPSDFSGVTP KKREIQTPNP MLTPSATPGG  420
VGLTPRIAMT PSRDSFGITP KGTPIRDELH INEDMDIHDS EKLEQRRQAD LRRNLRSGLG  480
NLPQPKNEYQ IVIQPPPEDN EELEEKIEED MSDRIAREKA AEEARQQALL RKRSKVLQRE  540
LPRPPMASLE LIRDSLLRAD GDKSSFVPPT SIEQADEMIR KELLALLEHD NAKYPLEEKP  600
SKEKKKGSKH PSNRSAASIP VIEDFEEDEL KQADNLIKVE AQYIRVAMGH EDESLDEFIE  660
AHKTCINDLM YFPTRNAYGL SSVAGNMEKL AALQNEFEIV KTRLEAEREK ALRLEKKVNV  720
LTQGYQIRAE RQLLPPIEVT LKQMDTAGTE LECFQALQRQ EQLAASHRIN GLWEEVQKQK  780
ELEQTLQRRY GDLVAELERI QQLIINYRAL AIKQEEIAAK NRALELAQAT AKQAAILNTE  840
PSEPMPSDEL GSSLPVGSSD EKGSDQQMDI DSEKVHGARA TDTSLTNNVS SEPMPSDELG  900
SSLPVGSSDE KVSDQQMDVD SEKVHSARAT DTSFTNNVPS DEVQKTLVQG SGHEASGTCP  960
SGSDINNQNG VPGPTGDSIN RGDIISDVGV AVENKVNDDS VGVDAGDAVM ITEVMKDSSA  1020
AIEGESTQER VDGFATADVM QVSSGGDDKV NQMKDEGKLP VIVVDLTSSE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5mqf_L0.028013799Cell division cycle 5-like protein
5xjc_L0.028013799Cell division cycle 5-like protein
5yzg_L0.028013799Cell division cycle 5-like protein
5z56_L0.028013799Cell division cycle 5-like protein
5z57_L0.028013799Cell division cycle 5-like protein
5z58_L0.028013799Cell division cycle 5-like protein
6ff4_L0.028013799Cell division cycle 5-like protein
6ff7_L0.028013799Cell division cycle 5-like protein
6icz_L0.028013799Cell division cycle 5-like protein
6id0_L0.028013799Cell division cycle 5-like protein
6id1_L0.028013799Cell division cycle 5-like protein
6qdv_O0.028013799Cell division cycle 5-like protein
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1185204KRRELKAAGIDNRQRRRKRK
Functional Description ? help Back to Top
Source Description
UniProtComponent of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250|UniProtKB:Q99459, ECO:0000269|PubMed:17298883, ECO:0000269|PubMed:17575050, ECO:0000269|PubMed:8917598}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00028SELEXTransfer from AT1G09770Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011038518.10.0PREDICTED: cell division cycle 5-like protein
SwissprotP929480.0CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBLB9I5N30.0B9I5N3_POPTR; Uncharacterized protein
STRINGPOPTR_0013s04340.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40723354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09770.10.0cell division cycle 5
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Li S, et al.
    MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis.
    Plant Cell, 2018. 30(2): p. 481-494
    [PMID:29437988]