PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG028721.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 121aa    MW: 13576.9 Da    PI: 10.9774
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG028721.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B347.53.1e-15594292
                 EEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                  k+l ++d+  s+ l++p k++++    +g     ++ +  de g +W +++++rkk++   vl+kGW+ Fv+ ++Lk+gD + F+l++ + +++
  CCG028721.1  5 SKILGNKDT--SKTLSVPTKYLKSLpsfKGR--HAVEFQAIDEGGFVWAFQCSIRKKGNPkPVLSKGWRAFVRNKKLKVGDKIKFSLNQ-TAATP 94
                 566644444..4559*******999966444..67899**************997777767*************************987.44445 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.4472101IPR003340B3 DNA binding domain
SuperFamilySSF1019362.35E-14395IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-16396IPR015300DNA-binding pseudobarrel domain
CDDcd100178.11E-17494No hitNo description
SMARTSM010197.4E-74101IPR003340B3 DNA binding domain
PfamPF023628.0E-13595IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 121 aa     Download sequence    Send to blast
MTTFSKILGN KDTSKTLSVP TKYLKSLPSF KGRHAVEFQA IDEGGFVWAF QCSIRKKGNP  60
KPVLSKGWRA FVRNKKLKVG DKIKFSLNQT AATPFYRVQA EKEVKIFGAI FGYSPIIATF  120
P
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RKKGNPKPVLSKGWRAFVRNKKLK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011010225.14e-77PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLU7DW617e-72U7DW61_POPTR; Uncharacterized protein
TrEMBLU7DYN25e-72U7DYN2_POPTR; Uncharacterized protein
STRINGPOPTR_0219s00200.11e-72(Populus trichocarpa)
STRINGPOPTR_0219s00220.19e-73(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G43950.11e-08auxin response factor 23